Sciurus carolinensis (gray squirrel): 124986586
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Entry
124986586 CDS
T08117
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124986586
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124986586
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
124986586
NCBI-ProteinID:
XP_047410981
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Position
6:99627415..99633247
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AA seq
797 aa
AA seq
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MEIEWLQNRRQRQVLLFFVLLSLSGAGAELGPYLVVEETERGSLVANLVKDLGLQLTEMS
TRRARIISQGDKEHLQLKVQTGDLLINNKLDREELCGPTEPCILNFQVLIEKPLKIFQAE
LRVKDINDHSPVFPEKEILLKIPENSPLGNVFPLNNALDLDVGSNNVQNYKISPNSHFRV
VTHERSNGKKYPQLVLEKELDREEQPELRLTLTALDGGSPPLSGTAEVHIEVMDTNDNAP
EFQQSIYKVQIPENSPVSSLVVTVSASDLDSGINGKITYTLFQPSEDISETLELNPMTGE
IRLRKQVDFERVLFYEVDIKATDGGGLSGECTLLLQVLDVNDNHPEVAVSALNSPIPENS
PEMVVAVFRVSDPDSGNNGKTISSIPEDLPFLLKPSGKNFYTLETKRALDREERAEYNMT
ITVTDMGTPMLKTQLNITVQVSDVNDNAPAFSQTSYTLSVRENNSPALHIGGVSATDRDS
GSNAQLTYSLLPPQDPHLPLASLVSINADNGQLFALRALDFEALQAFEFRVGATDHGSPA
LSSQTLVRVVVLDDNDNSPFVLYPLQNASAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
WLSFQLLKATEPGLFGVWAHNGEVRTARLLSERDAARHRLVVLVKDNGEPPLSASVTLHV
LLVEGFSQPYLPLPEVAPERAQVDSLTVYLVIALASVSSLFLFSVLVFVAVKLCRRSRAA
PLGVCSVPEGHFPGHLVDVSGTGTLSQSYQHEVCLKESSVTSEFKFLKPIIPVHPPECHG
KEIEENSICHNTFGFNY
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggagattgaatggctgcaaaatcggagacaaaggcaagtcttacttttctttgttttg
ctgagcttgtctggggcaggcgctgagttgggaccatatttggtagtggaagaaacggag
aggggttccttagtggcaaatctagtgaaagacctggggctgcagttgacagagatgtcc
acccgcagggcccggatcatttcccaaggagacaaagagcatttgcagctcaaagttcaa
actggggatttgctcataaataataaattagatcgagaggagctatgtgggcccactgag
ccttgcatactaaatttccaagtgttaatagaaaaacccttaaagatatttcaggctgaa
ctgagggtgaaagacataaatgatcattctcctgtgttccctgaaaaagaaatacttctt
aaaataccggaaaacagtcccctaggaaatgtgttccctctgaataatgctctggacttg
gacgtaggaagcaataatgttcagaactataaaatcagccccaactcccatttccgcgtt
gttacccacgagcgcagcaatggcaagaaataccctcaactggttttggaaaaagagctg
gatcgggaggaacagcctgaattaagattaaccctgacagctctggatggcggctctcca
ccgctgtctggaacagcagaggtccatatcgaagtgatggacaccaacgataatgcccct
gagtttcagcagtcaatctacaaggtgcaaattcctgagaacagcccggtaagctctctg
gtagtcactgtctccgccagtgatttagacagcgggatcaatgggaaaataacatataca
ctctttcagccttcagaagatattagcgaaactttggagctaaatcctatgacaggagaa
attagacttagaaaacaagtagattttgaaagagtcctgttttatgaagtggacatcaag
gctacagacggaggaggtctttcaggagaatgcactcttctcctgcaggtgttggatgta
aatgataaccaccctgaagtggccgtgtctgcactcaacagtcccattcctgaaaactcc
ccggagatggtagttgctgttttcagagtttcagatcctgactctgggaacaacggaaag
acgatttcctccattccggaagacctgccctttcttctaaaaccttcaggcaagaacttt
tacaccttggaaacaaagagagcactagacagagaagaaagagcggaatacaacatgacc
attactgtcacagatatggggacacccatgctaaaaactcagcttaacataacagtgcag
gtatcagacgtcaatgacaacgcccctgccttctcgcagacgtcctacacgctgtcggtg
cgcgagaacaacagccccgccctgcacataggcggcgtcagcgccacagacagagactca
ggcagcaacgcccagctgacctactcgctgctgccgccccaggacccgcacctgcccctc
gcctcgctggtctccatcaacgcggacaacgggcagctgttcgcgctgagggcgctggac
ttcgaggccctgcaggcgttcgagttccgcgtgggcgccacagaccacggctcgcccgcg
ctgagcagccagacgctggtgcgcgtcgtggtgctggacgacaacgacaactcgcccttc
gtgctctacccgctgcagaatgcctctgcgccctgcaccgagctggtgcccagggcggca
gagccgggctacctggtcaccaaggtggtggcggtggacggagactcgggccagaacgcc
tggctgtcgttccagctgctcaaggccacggagcccgggctgtttggcgtgtgggcgcac
aatggcgaggtgcgcaccgccaggctgctgagcgagcgcgacgcggccaggcacaggctg
gtggtgctggtcaaggacaatggcgagccgccgctgtctgccagcgtcacgctgcacgtg
ctgctggtggaaggcttctcgcagccctacctgccgctgccggaagtggcgcccgagcgc
gcgcaggtcgactcgctgacagtctacttggtcatcgccctggcctcggtgtcatcactc
ttcctcttttcggtgctggtgtttgtggcggtgaagctgtgcaggaggagcagggcggcg
ccgctgggtgtgtgctctgtgcctgagggccactttcctggtcacctggtggatgtcagt
ggcactggcaccctgtcccagagctaccagcatgaggtgtgtctgaaggaaagttctgtg
accagcgagtttaagttcttgaaacccattatacccgtccacccaccagagtgccatggg
aaagaaatagaagaaaattctatctgccacaatacttttggatttaattattaa
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