Sciurus carolinensis (gray squirrel): 124986601
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Entry
124986601 CDS
T08117
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124986601
03036 Chromosome and associated proteins [BR:
ncar03036
]
124986601
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124986601
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
124986601
SLIK complex
124986601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
124986601
NCBI-ProteinID:
XP_047411007
LinkDB
All DBs
Position
6:complement(83210094..83281024)
Genome browser
AA seq
1809 aa
AA seq
DB search
MKCLSYSLRQEICKMSLGHLVIPKSNQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDS
DSGSESGSQSESESDTSRENKVQAKPPKVDGTEFWKSSPSILAVQRSAMLKKQQQQQQQQ
QQQHPASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEERE
KSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSDDDDDEDYDNDKRSS
RRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIEKFMDCRIGRKGATGATT
TIYAVEADGDPNAGFEKNKESGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNY
KKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCK
WQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSY
IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGP
FLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTT
YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKE
LWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQ
ILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNE
FYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQ
RLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDL
QAQARAHRIGQKKQQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTG
SAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTV
GDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLP
RMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFNDAEI
RRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTG
GRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDI
DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK
LLSRDLAKKEAQRLSGAGGLKRRKIRAKKNKAMKSMKVKEEIKSDSSPLPSEKSDEEDDK
DEITSVKHPNKKIKTERDSEEKPEPDVCIKKEPEEKREAKEKENKKELKREIKEKEDKKD
IKEKDFKEKRENKVKEAMQKEKDIKEEKLGESKSESKERSKKSLVSDAPVHITASGEPVP
ISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITEC
LKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLSAHM
VRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSN
GKDHREWDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLHS
DHRSSSEYIHHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSVEHKSTP
EHTWSSRKT
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtctgagttacagcctgaggcaagaaatatgcaagatgagcctgggacatctt
gtcataccaaaaagcaaccagtcagatgatgattctggatcagcttcaggctctggatca
ggttcgagttctggaagcagtagtgatggaagcagtagccagtcaggtagcagtgactct
gactctggatctgaatcaggcagtcaatcagagtctgagtcagacacgtcccgagaaaac
aaagttcaagccaaaccaccgaaagttgatggaactgagttttggaaatctagccccagt
attctggctgttcagagatctgcaatgctcaagaagcaacagcagcagcagcagcagcag
cagcagcaacatccagcttcatctaatagtggatcagaagaggattcctctagcagtgaa
gattctgatgattcatcaagtgaggtcaagaggaaaaagcataaagatgaagattggcag
atgtctgggtcaggatctccatctcagtctggttcagattcagaatctgaagagagagag
aaaagtagttgtgatgaaacagagtctgattatgaaccgaaaaacaaagtcaaaagcaga
aaacctcaaaatcgctctaagtcaaaaaatggaaaaaagattattggacaaaaaaagaga
cagattgattcatctgatgatgatgatgatgaagattatgataatgataaaagaagttct
cgtcgccaggcaactgtcaatgttagctataaggaggatgaagaaatgaaaacagattct
gatgatctactagaagtgtgtggagaggatgttcctcaacctgaggaggaagaatttgaa
acaatagaaaagtttatggactgtcggattgggagaaaaggagctactggtgctactaca
accatctatgcagttgaagcagatggtgacccaaatgcaggatttgaaaaaaataaggaa
tcaggagaaatccagtatttaattaaatggaaaggatggtcacatatccacaacacctgg
gagacagaagaaacccttaagcaacagaatgttagaggaatgaaaaaattggataattac
aagaaaaaagatcaggaaacaaaaagatggttgaaaaatgcttcaccagaagatgtagaa
tattataattgccaacaagaacttacagatgatctccataagcagtatcaaatagtggag
cgtataattgctcattccaatcaaaagtcagcagctggttatcctgattattattgcaaa
tggcagggccttccatactcagagtgcagctgggaagatggagctctcatttccaaaaag
tttcaagcatgcattgatgagtattttagcaggaaccaatcaaaaaccactccctttaaa
gattgcaaagtattaaaacagagaccaagatttgtagccttgaagaagcagccatcctat
attggtggacatgaaggtttagaattgagagattatcagcttaatggtttaaattggctg
gctcactcttggtgcaagggaaatagttgcatacttgctgatgaaatgggccttggaaaa
acaattcagacgatctcatttttgaactatttgtttcatgaacatcagttatatggacct
tttctgttagtagtaccactttccactctcacgtcctggcaaagggagattcagacatgg
gcttctcaaatgaatgctgtggtttatttaggtgatattaacagcagaaacatgataaga
acacatgaatggatgcatccccagaccaaacggttaaaatttaatatacttttaacaact
tatgaaattttattgaaggataaggcattccttggtggtttgaattgggcatttataggt
gttgatgaggcacatcgattaaaaaatgatgactcccttctttataaaactttgatagat
tttaaatctaatcaccgtctgcttatcactggaactcctctacaaaattccctcaaagag
ctgtggtctttactacatttcattatgccagaaaagttttcttcctgggaagattttgaa
gaagaacatggaaaaggaagagaatatggttatgcaagcctccacaaagagcttgagcca
tttctcttacgccgagttaagaaagatgtagaaaaatctcttcctgccaaggttgagcaa
attttaagaatggaaatgagtgctttacagaaacaatattacaaatggattttaactaga
aactacaaagccctcagcaaaggttccaagggcagtacctcaggctttttgaacattatg
atggagctaaagaaatgttgtaaccattgctacctcattaaaccaccagataataatgaa
ttctataataaacaggaagccttacaacacttaattcgtagcagcggaaaattgattctt
cttgacaagctgttaattcgcctaagagaacgaggcaatcgtgttctcattttttctcaa
atggtgcggatgttagatatacttgcagaatatttgaaatatcgtcagttcccctttcaa
agattagacggatcaataaaaggggagctgaggaaacaagctctagatcattttaatgct
gagggatcagaggatttctgctttttgctttctacaagagctggtggtttagggattaat
ttagcctctgctgacactgttgttatatttgattctgactggaatccacaaaatgatctt
caggcacaggcaagagctcatcgaattgggcaaaaaaaacaacaggtgaatatatatcgt
ctagttaccaagggatcagttgaagaagatattcttgaaagggccaaaaagaagatggtt
ttagatcatcttgtgattcaaagaatggacacaactggcaagactgtacttcacacaggt
tctgctccatcaagttctactcctttcaataaagaagaattatcagccattttaaagttt
ggtgctgaggaactttttaaggaacctgaaggagaagaacaagagccccaggaaatggat
atagatgaaatcttgaagagggctgaaactcatgaaaatgaaccagggcctttaaccgta
ggagatgaattgctttcccagttcaaggttgccaacttttcaaatatggatgaagatgac
attgaattggaacctgaaagaaattcaaagaattgggaagaaatcattccagaagatcaa
agaagacgattagaagaagaagaaagacaaaaggaacttgaagaaatttatatgctccct
agaatgagaaactgtgcaaaacagattagtttcaatggaagtgaagggaggcgcagtaga
agtaggagatactctggatctgatagtgattcaatctcagaaagaaaaaggccaaagaaa
cgtggaagaccacgcactataccccgggagaatattaaaggatttaatgatgcagaaatt
aggcggtttatcaagagctataagaaattcggtggccctttggaaagattagatgcaatt
gctcgagatgctgaattggttgataagtcagaaacggacctcagacgattaggagaattg
gtacataatggctgcattaaagctttaaaggacagttcttcaggaacagaacgaacaggt
gggagacttggaaaagtgaaggggcccacattccgaatatcaggagtacaagtgaatgcc
aagctagtcatctcccatgaagaagaattaatacctttgcacaaatccattccttcagat
ccagaagaaagaaagcagtatacaatcccatgccacacgaaggcagctcattttgatata
gactggggcaaagaagatgactccaatttgttaattggtatttatgaatatggatatgga
agctgggaaatgattaaaatggatcctgacctcagtctaacacataagattcttccggat
gatcctgataaaaaaccacaagcaaaacagttgcagacacgtgcggactacctcatcaaa
ttacttagtagagatcttgcaaaaaaagaagctcagagactttctggtgcaggaggttta
aagagaagaaaaataagagctaagaagaataaagcaatgaaatctatgaaagtgaaagag
gaaataaagagtgattcctctcccctgccttcagagaagtctgatgaagaagatgataag
gatgagatcacttctgtgaaacatccaaataaaaaaattaaaacagaaagagacagtgaa
gagaaacctgagccagatgtttgtataaagaaggaaccagaagagaagagggaagcaaaa
gaaaaggaaaataaaaaagaacttaaaagggagataaaagaaaaagaggataagaaagat
ataaaggaaaaagattttaaagaaaaaagagaaaacaaagtaaaagaagctatgcagaaa
gaaaaagacataaaggaagaaaagttgggtgaatccaagtctgaaagtaaagaaagatca
aaaaaatctttagtgtctgatgctccagttcatatcactgcaagtggtgaaccagttccc
atatctgaagaatctgaagagctggatcagaagacattcagcatttgtaaagaaagaatg
agacctgttaaggcagctttgaaacaacttgatcggcctgagaaaggcctttcagaaaga
gaacaactggaacatactagacaatgtttaataaaaattggagatcatatcacagaatgt
ctgaaagagtatacaaatcctgaacaaataaaacagtggagaaaaaacctgtggattttt
gtatctaaatttactgagtttgatgcaagaaaattgcataaattatataagcatgctatt
aagaagcgccaggaatctcagcaaaataatgaccagaacagtaatttgagtgctcatatg
gtcagaaatccagatgtggaaagattaaaagaaaatacaaatcacgatgatagcagcagg
gacagttactcttctgatagacatttatctcagtatcacgatcaccataaagatcgacat
cagggagattcttacaaaaagagtgattccaggaaaagaccatattcatcatttagtaat
ggtaaagatcatcgtgagtgggatcactacaagcaagacagcagatactacagtgacaga
gaaaaacacagaaaactggatgatcacaggagtagagatcacaggtcaaatttggaagga
agtttaaaagatcgatctcattctgatcatcgatctcattcagatcatcggttacattca
gatcaccggtcaagttctgaatatatacaccataaatcttccagggattataggtatcac
tcagattggcaaatggaccacagagcttccagtagtggccctaggtcaccactagatcag
aggtctccatatggctccagatctccatttgaacattcagttgaacacaaaagtacacct
gagcatacctggagtagtcggaaaacataa
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integrated database retrieval system
