Sciurus carolinensis (gray squirrel): 124986631
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Entry
124986631 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein Sec24A-like
KO
K14007
protein transport protein SEC24
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124986631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124986631
Membrane trafficking [BR:
ncar04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
124986631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Sen15
Motif
Other DBs
NCBI-GeneID:
124986631
NCBI-ProteinID:
XP_047411080
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All DBs
Position
6:complement(135804792..135892703)
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AA seq
1092 aa
AA seq
DB search
MSQPGIPASGGAPTSLQAQNGASSASGSPYTNGPVQNALMSSQVSVSQGYNFQLPGSYPH
LIPAKTLHPVSGESNYGGSQGSGQTLNRPPVASNPVTPSLHSGPVPRMPLPASQNSAAAP
MPSSSFPPGANVPPPSNWQYNYPPTGSQTNHCPRASSQPTVLGSTNLTTNHQYVSSGDPS
LQNSFIKSGSPLPLRNPPLPTTFQPGTPHGPPPPRGPPPIRDPMPQNSSHRPAPQPLFNS
AVNQEGITSNANHGSMVVHSSYDEIEGGGFLATPQLTNKNPKMSRSVGYAYPSLPPGYQN
TTPPSTTGMPPSSLNYPSGPQAFTQTPLGANHLTASMSGLSLHPEGLRVINLLQERNMLP
STPLQPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLP
VVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFMYNPLTRVYGEPHRRP
EVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTR
TKIGFITFDSTIHFYSLQEGLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQELLKT
LPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQTQLPTLGMGALKPREEPNQRSSA
KEIHLTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHH
QHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNP
DAGYAVQMSVEENLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNEVFLGADVQ
AISGLLANMAVDRSMTASLSDARDALVNAVIDSLAAYRSLVLSNQQPGLMVPFSLRLFPL
FVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNIN
DRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCAQNFLTQVLGVQNYASIPQTM
TDLPELDTPESARXSSFISWLREQRPFFPILYIIRDESPMKANFLQNMVEDRTESALSYY
EFLLHIQQQVNK
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaccggggataccggcctccggcggcgccccaaccagcctccaggcccagaac
ggggcctcctcggcctcggggtctccttacaccaacggtcctgtccaaaatgcactgatg
tcttcacaagtgtcagtgagtcaaggatataatttccagcttccaggatcctaccctcat
ctaataccagcaaagactctgcatccagtctctggagagtctaactatggtggttctcag
ggatctgggcaaactcttaatagaccacctgtggcttctaatccagtaacaccttcactc
catagtggtcctgttcctcgaatgccactacctgcttctcagaattcagctgctgcacca
atgccttccagtagctttcctcctggagccaatgtaccaccaccttcaaattggcagtat
aactatccacccacaggatcacagacaaaccattgtcctcgtgcatcatcacaaccaact
gtattggggagtacgaatttaacaacaaatcatcaatatgtttcttctggagacccttca
cttcaaaacagcttcataaaatcaggttcgccacttcccttacggaatcctcctctgcct
accactttccaaccaggaactcctcatgggccccctccacctagaggcccacctccaata
agggaccccatgccccagaattcatcacacagacctgcaccccagcctctatttaattca
gctgtcaatcaagaaggtattacatcaaatgccaatcatggatctatggttgtccatagt
agttatgatgaaattgaaggaggtggcttcttggcaacaccacagcttactaataagaat
cccaaaatgagccgaagtgttggatatgcatatccctctttaccacctggttatcagaac
acaacaccacctagtacaactggaatgccaccttcttccttgaattatccaagtggcccc
caggcctttactcagactcccttaggtgctaatcatttaactgcaagcatgagtggatta
agtctacatccagaggggctaagagttatcaatcttcttcaagaaagaaatatgcttccc
tcaacacctttgcagcctccagttccaaatttgcatgaagacatccagaaactcaactgt
aacccagagttatttcgatgcacgctgactagcattcctcagactcaggccttactgaat
aaagccaaacttcctttggggctgctgcttcatcctttcaaagatctagtgcaattgcct
gtggttacctccagtacaattgtgagatgccgttcatgcaggacatacatcaaccctttc
gtcagctttcttgatcagaggagatggaagtgtaacttatgttatcgggtcaatgatgta
cctgaagaattcatgtacaatcctttgaccagagtttatggagaacctcacagaagacct
gaagttcaaaatgctactattgagtttatggctccttcagaatacatgttacgaccacca
caacctccagtatacctctttgtttttgatgtgtctcataatgcagttgaaactggatac
ttgaattcagtttgccagagtttgttagacaatctggatttgcttcctggcaacactaga
acaaaaattggcttcataacatttgacagtacaattcatttctacagtcttcaagaaggt
ctctctcaacctcagatgctaatagtttcagatattgaagatgtttttatacctatgcca
gagaacttattagtaaatttaaatgaaagtaaagagcttgttcaagaattactgaaaact
ttgccacaaatgtttaccaagactctggagactcagagtgccttgggtcctgcacttcag
gctgcctttaagctgatgtccccaactggtggtcgaatgtctgtctttcaaacacaactc
ccaactcttggaatgggagccctgaaaccacgagaagaacccaaccaaagatcatctgct
aaggaaatacacctgacaccgtccactgacttctataagaaattagcgttggactgttct
ggtcagcaggtagctgtggacttattccttctcagtggacagtattctgatttggcttct
ctggggtgtatttctcggtactcagcaggtagtgtctattactatccttcttaccatcat
cagcacaacccagtccaagtacagaaattacagaaggaactacagaggtacctcactcgg
aagattggctttgaggcagttatgaggattcgatgcactaaaggtctttccattcatacc
ttccatgggaatttctttgttaggtcaacagacttactgtctttgcccaatgtcaatcca
gatgctggatatgcagtacagatgtcagtagaagaaaatcttactgacactcagttggtt
tcttttcagtcagcactcttgtatacatcaagcaaaggtgaaagaagaattcgtgtccat
actttgtgtttgccagtagtttcaactctaaatgaagtctttcttggagcagatgttcaa
gcaatttcaggattattggccaatatggctgttgacaggtccatgactgccagtctgagt
gacgcccgagatgctctagtgaatgccgtcattgactctcttgcagcttaccggtcttta
gtcttaagtaaccagcagcctggactcatggttcctttctctttgagactttttccactt
tttgtgttggctcttcttaaacagaaatcattccagactgggacaaatgcacgtcttgat
gaacgcatttttgctatgtgtcaagtgaaaaatcagcctttggtttaccttatgcttaca
acgcatcccagtttgtatagagttgacaatctctcagatgagggagcactcaacatcaat
gatagaaccatacctcagcctcctatccttcagctctctgtggagaaactgagtagagat
ggggctttcctcatggatgcaggctctgtactaatgctttgggttggaaaaaattgtgca
cagaattttctcacccaagttctaggagttcaaaactatgcatcaattccacagactatg
acagaccttccagaacttgatacaccagaatctgccaganacagtagcttcatctcctgg
cttagagagcagagaccatttttcccaatactttacataataagggatgaaagtcctatg
aaagcaaatttccttcaaaacatggtagaagacagaacagaatctgcattatcatattat
gaattcctcttgcatatacagcaacaagtaaataaatga
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