Sciurus carolinensis (gray squirrel): 124986675
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Entry
124986675 CDS
T08117
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124986675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124986675
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
124986675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM
DUF7385
zf-WRNIP1_ubi
Rad50_zn_hook
UIM_2
Motif
Other DBs
NCBI-GeneID:
124986675
NCBI-ProteinID:
XP_047411202
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Position
6:130151366..130306687
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AA seq
783 aa
AA seq
DB search
MVASKVARACAGPESASPARRASSSRAPDIPQLLTCCSGSRPPASGRRGSAERRAPADKR
MPRRKKKVKETPECQNLEKEDSEATSSVSVKRKRRLEDAFIVISDSDGEQEPKEENGLQK
TKIKQSNRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLN
TCRPSDACATRSRPLATGPSSQSHQEKTTDSGTTEGMFWLLLLINYNCIWQLVPPSLFKG
SHISQGNEAEEREEPWDHTENTEEEPVSGSSGSWDQSSQPVFENENVKCFDRCTGHLAEH
TKCGKPQESTGRGCAFLKAAQGRGDTSRHCLPTPADAKVLQDIGGTVHYFWGIPFCPAGV
DPNQYTKVILCQLEVYQKSLKMAQRQLLKKKGFGEPVLPSPPSLIQNECGQGDQASEKNE
GISEDMGDEDTEERQESRASVWHSKPKDFQESPIKSLKQKLLLEEEPTTSHGQSSQGLFV
EETSEEGNSVPASQSIAALTSKRNLVLMPESSAEEITVCPETQLSSPETLDLEREDSPGS
RETLDEVGNREDAEKEMPTSTFSSSTQVSCPLCDQGFPPTKIERHAMYCNGLMEQESVLT
RRQREAKTKSDSGTTAQTSLDIDKIEKCYLCKSLVPFGEYQYHVDSCLQLARSNQGDGPE
GSDRARSTVEGKWLRNRKEKGHNEGRLLSLLEQSEHKTVDAEIKTKSSETGTFRLPPPGV
EEAGCSREMQSSLTQLGLNESPIKSFVSISEATDCLVDFKKQLTVQPVSRTRTKAGRGRR
RKS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgtccaaagtcgcccgcgcctgcgcgggtccagagagcgcgtctccagcccgc
agagcctcctcttcgcgcgcgcccgacatcccccaactcctgacgtgctgcagcggctcg
cgacccccagcgtccggaaggaggggctcggcggagcggcgcgcgccggccgacaaaagg
atgccacgcagaaagaaaaaagttaaagaaacccctgaatgtcaaaacctggagaaggag
gattctgaagctaccagttctgtcagtgtgaagaggaaacgtagacttgaggatgcattc
attgtgatatcagatagtgatggagagcaggaaccaaaggaggagaatggattgcagaaa
acgaagataaaacagtcaaatagagcaaagtgtttggccaaaagaaaaattgcacagatg
acagaagaagagcagtttgctctggctcttaaaatgagtgagcaagaagctagggaggtg
aacagccaggaggaggaagaagaggagctcttgagaaaagccattgctgaaagcctgaat
acttgccggccttctgatgcctgtgctaccagatctcgacctctggccactggaccatcg
tcacagtcccatcaagagaaaaccacagattctgggaccactgaaggcatgttctggctc
cttctactcatcaactataactgcatatggcagctggtacctccatcactgtttaaaggc
tcacatatcagtcagggaaacgaggctgaggaaagagaggagccttgggaccacactgaa
aacactgaagaggagccggtctctggcagctcaggaagctgggaccagtcaagccagcca
gtgtttgagaatgagaacgttaaatgttttgacagatgtactggccacttggctgagcac
acaaagtgtgggaagccacaggaaagtactgggaggggttgtgcttttctcaaagctgcc
cagggtaggggggacacatctaggcattgtctgcctaccccagcagatgccaaagttctc
caggacattggaggcactgtgcactacttctggggtattccattctgccctgctggagta
gaccctaaccaatataccaaggtcattctctgccagttggaggtttatcaaaagagctta
aaaatggctcagaggcagcttttaaaaaaaaaagggtttggggaaccagtgttacctagc
cctccttctctgatccagaatgaatgtggccaaggagatcaggctagtgaaaaaaatgaa
ggcatctcagaagatatgggagatgaagacacagaggagaggcaggagtctagggcatct
gtctggcactcaaaacccaaggatttccaagaaagcccaattaaaagcttgaaacagaaa
cttttgttggaggaagaaccaacaaccagtcatggtcagtcttcccaaggactgtttgtt
gaagaaacttctgaagaaggaaactctgtacctgcctcacaaagcattgctgctttgacc
agtaagagaaacttagtccttatgccagagagttctgcagaagaaatcactgtttgtccc
gagacacagctaagttcccctgaaactcttgatcttgaaagagaagactctcctggtagc
agagagaccctggatgaagttggtaacagggaagatgctgagaaggaaatgcctacttct
accttctcatctagtacccaggtatcctgcccattatgtgatcaaggcttcccgcccaca
aagattgagcgacatgctatgtactgcaatggtctgatggagcaggaatcagtgttgact
cgaagacaaagagaggctaagaccaagagtgacagcgggacaacggcacagacttctcta
gacattgacaagattgaaaagtgttatctttgtaaatccctggtcccattcggagagtat
caatatcatgtagattcctgtctccagcttgcaaggagtaaccaaggagatgggcctgaa
ggaagtgatagagcacgttcaactgtggaagggaagtggctgaggaaccgaaaggaaaaa
ggccataatgaaggtcgactccttagtctcttggaacagtctgaacacaagactgtagat
gcagagataaaaactaaatcttcagaaacaggaaccttcaggttgcccccaccaggggtg
gaagaggccggctgcagcagagagatgcagagttccctcacacaacttggcttaaatgaa
tctcctatcaagtcttttgtttccatttcagaagccacggattgcttagtggacttcaaa
aagcaacttactgttcagccagttagccgtacacggaccaaagcaggcagaggaagaagg
agaaaatcctga
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