Sciurus carolinensis (gray squirrel): 124986686
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Entry
124986686 CDS
T08117
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03440
Homologous recombination
ncar03450
Non-homologous end-joining
ncar04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124986686
03450 Non-homologous end-joining
124986686
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
124986686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncar03032
]
124986686
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124986686
DNA replication proteins [BR:
ncar03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124986686
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124986686
BRCA1-C complex
124986686
NHEJ (non-homologous end-joining)
MRX complex
124986686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
DUF2703
Motif
Other DBs
NCBI-GeneID:
124986686
NCBI-ProteinID:
XP_047411226
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All DBs
Position
6:complement(137685584..137775564)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAHETDVRAQIRLQFRDVNGELIAVQRSMVCSQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDPLKNRLKEIEHSLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIQARDSLIQSLATQLELDGFERGPFSERQIKNFHKLARERQEREAETTNQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
LKKAERELSKAEKNCNVETLKSEVISLQNEKVDLDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSEELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINSELRRKEEQLSSYEDKLFDICGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIIP
EEDSAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQSVELSTEVQS
LCREIKDAKEQINPLETTLEKFQQEKEELINKKHTSNKIAQDKLNDIKEKIKNIHGYVKD
IENYIQDGKDDYKKQKETELNKVITQISECDKHKEKINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERRQHLKEMGQMQVLQMKNEHQKLEENIENIKRNHSLALGRQKG
YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLIITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggattgaaaagatgagcattctgggcgtgcggagttttggaatagaggacaaa
gataagcaaattatcactttcttcagccccctcacaattttggttggacccaatggggcg
gggaagacgaccatcattgaatgtctaaaatatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcacgaaacagatgtgagagcc
cagattcgtttgcagtttcgtgatgtcaatggcgaacttatagctgtgcagagatctatg
gtgtgtagtcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattacgaga
acaaaacatggtgaaaaggtcagtctcagctctaaatgtgcagaaattgaccgagaaatg
ataagttctcttggggtctccaaatccgtgctaaataatgtcattttctgtcaccaagaa
gactctaattggccattaagtgaaggaaaggctctgaagcaaaagtttgatgaaattttt
tcagcaacaaggtacattaaagccttagatacacttcgtcaggtacgtcagacacaaggt
caaaaagtaaaagaatgtcaaacagagctgaaatatctgaagcaaaataaggaaaaagct
tgtgaaattcgtgatcagattactagtaaggaagcccagttaacatcttcaaaggaaatt
gtcaaatcctatgagaatgaactcgatccattgaagaatcgcctaaaagaaattgaacac
agcctctctaaaataatgagacttgacaatgaaattaaagccttggatagccgaaagaag
caaatggaaaaagataatagtgaactggaacagaaaatggaaaaggtgtttcaagggact
gatgagcaactaaatgatttatatcataatcatcagagaacagtaagagagaaagaaagg
agattagtagactgtcagcgtgaactggaaaaactgaataaagaatctagacttctcaat
caagaaaaatcagaacttcttgttgaacagggtcgtctacaactacaagcagatcgccat
caagaacatatccaagctagagactcattaattcagtctttggcaacacagctagaattg
gatggctttgagcgtggaccattcagtgaaagacagattaaaaattttcacaaactggca
agggaaagacaagaaagggaggcagaaactaccaaccaactaatgaatgactttgcagaa
aaagaaactctgaaacaaaagcagatagatgagataagggataagaagactggactggga
agaataattgagctaaaatcagaaatcctaagtaagaaacaaaatgagctgaaaaatgtg
aagtatgaattacagcagttggaaggatcatctgacaggattcttgaactggaccaggaa
ctcaaaaaagctgaacgtgagctaagcaaggctgagaaaaattgcaatgtagagacccta
aaatcagaagtaataagccttcaaaatgagaaagtagacctagacaggaccttacgtaaa
ttggaccaggagatggagcagttaaatcatcatacaacaacccgtacccagatggagatg
ctgaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatctaggcacagt
gaagaactaacttcattgttggggtattttcccaacaaaaagcagcttgaagactggctt
catagtaaatcaaaagaaattaatcagaccagagacaggcttgccaaattgaacaaagaa
ctagcttcagcagagcaaaataaaaatcatataaatagtgaactaagaagaaaggaagag
cagttgtccagttatgaagacaagctgtttgatatttgtggtagtcaggattttgaaagt
gatttagataggcttaaagaggaaattgaaaaatcttcaaaacagcgagccatgcttgct
ggagccacagcagtttactcccagttcattactcagctaacagatgaaaaccagtcatgt
tgccctgtctgtcagagagtttttcaaacagaagccgaattacaagaggtcatcagtgat
ttgcagtctaagctgaggcttgctccagataaactcaagtcaacagagtcagagctaaag
aaaaaagaaaggcggcgtgatgaaatgctgggacttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaattccagaattaagaaacaaactacagaatgtcaatagagac
atacaacgcctaaagaatgacatagaagaacaggaaacactcttaggtacaataattcct
gaagaagatagtgctaaagtatgtctgacagatgttacaattatggagaggttccagatg
gaacttaaagatgttgaaagaaaaattgcacagcaagcagctaaactacaaggaatagac
ttggatcgaactgttcaacaagtaaaccaggagaaacaagaaaaacaacataaattagat
acagtttccagcaagattgaattgaatcgtaaacttatacaggaccagcaggaacaaatt
caacacttaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatccactaac
ttgcagcgtcgccagcaactagaggagcagagtgtagaattatccaccgaagttcagtcg
ttatgtagagagataaaggatgctaaagagcagataaatcctttggaaacaacattggaa
aagttccagcaggaaaaagaagaattaatcaataaaaaacatacaagcaacaaaatagca
caggataaactgaatgatatcaaagagaagattaaaaatatccatggttatgtgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgaactt
aataaagtaataactcaaataagtgaatgtgacaaacataaagaaaagatcaataaagaa
atgggaatcatgagacaagatattgatacacagaagatacaagaaaggtggctacaggac
aacctcactttaagaaagagaaatgaagagctaaaagaagttgaagaagaaagaagacaa
catttgaaggaaatgggtcaaatgcaggttttgcaaatgaaaaatgaacatcagaagttg
gaagagaacatagaaaatataaaaagaaatcacagtttggcattggggcgacagaaaggt
tatgaggaagaaattattcattttaagaaagaacttcgagaacctcaatttcgggatgct
gaggaaaagtatagagaaatgatgattgttatgagaacaacagagctggtaaacaaagat
ctggacatttattataagacccttgaccaagcaataatgaaatttcatagtatgaaaatg
gaagaaatcaataaaattattcgtgatctttggcgaagtacctatcgcggacaagatatt
gaatacatagaaatacgatctgatgctgatgaaaatgtatcagcttctgataaaaggcgg
aattataactaccgagtggtgatgctgaagggagacacagccttggatatgcgaggacga
tgcagcgccggacagaaggtgttagcctcactcatcattcgcctggcgctggctgaaact
ttctgcctgaactgtggcatccttgccttggatgagccaacgacaaatctcgaccgagaa
aacattgaatctcttgcacatgctctggttgagataataaagagtcgctcccagcagcgt
aacttccagcttctgatcatcactcatgatgaagattttgtggaactcttaggacgttct
gaatatgtggagaaattctacaggattaagaagaacattgatcagtgctcagagattgtg
aaatgcagtgttagttccctgggatcgtatgttcattag
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integrated database retrieval system
