Sciurus carolinensis (gray squirrel): 124986814
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Entry
124986814 CDS
T08117
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
124986814
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124986814
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124986814
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124986814
NCBI-ProteinID:
XP_047411535
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Position
6:135274306..135643852
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AA seq
561 aa
AA seq
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MSLGDCAGGGGGCGDEAQKSSPAGSGGGRGRPATTVGSRAVSALCLLLSVGSAAACLLLG
AQAAALQGRVSALEEERELLRRSGPPGTLDAWAEPHLERLLREKLDGLVKLRTVREAPSE
CICPPGAPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRV
RMEHHLPHPPHMGDQGQDGATGPPGPPGPPGARGPPGDTGKDGPRGPQGPVGPKGEPGQD
GEMGPEGPPGSKGEPGIPGKKGDDGMPSQSGLPGPPGPKGEPGNVGPQGENGMDGAPGPK
GEPGHRGTDGAAGPRGPPGLKGEQGDTVVIDYDGRILDALKGPPGPQGAPGPPGIPGAKG
ELGLPGAPGIDGEKGPKGPKGDPGEPGPVGPKGEAGEMGLSGLPGADGPKGEKGESASDN
LQESLAQVIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGTSGERGPSGLPGPVGPP
GLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKGVKGQKGEPGPP
GLDQPCPVGPDGLPVPGCWHK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgggcgattgcgccggtggtggcggcggctgcggcgacgaggcgcagaagagc
agcccggctgggagcggcggcggccgagggcgccccgcgacgaccgtcgggtctcgggcg
gtgagcgcgttgtgcctgctgctctccgtgggctcggcggccgcctgcctgctgctgggc
gcccaggcggccgcgctgcagggccgagtgtcggcgctcgaggaggagcgtgagctcctg
cggcgctcggggccgccgggcaccctggacgcctgggccgagccgcacctggagcgcctg
ctgcgggagaagttggatggacttgtcaagctccgaactgtgcgggaagctccatccgag
tgcatctgtcccccaggtgcccctggacggcgtggcaagcccggaagaagaggcgaccct
ggtcctccagggcaatcaggacgagatggctacccgggacccctgggtctggatggcaag
cccggacttccaggccccaaaggggaaaagggtgcaccaggagactttggcccccgggta
agaatggagcaccacctccctcacccaccccacatgggggatcaagggcaagatggagct
actgggcctccagggccccctggaccacctggggcccgaggtcctcctggcgacactgga
aaagatggccccaggggacctcaaggcccagtgggtcccaaaggagagcctggacaagac
ggggagatgggccccgagggacccccagggtccaagggtgagcctggcattccaggaaag
aagggggatgacgggatgcccagccagtcagggctccctgggcccccagggcccaagggc
gagccagggaatgtggggccccaaggagagaatggcatggacggtgccccaggacctaag
ggggagcctggccaccgaggcacagatggagctgcggggccccggggtcccccagggctc
aagggtgagcaaggagacactgtggtgatcgactatgacggcaggatcttggatgccctt
aagggtcctcctggaccacagggagccccggggccaccagggatccctggagccaagggt
gagcttggattgcctggcgccccaggaatcgatggagagaagggtcccaaaggaccaaaa
ggagacccaggagagcctgggccagttggacccaaaggggaagcaggcgagatgggcttg
tctggacttccaggtgctgacggccccaagggagagaagggagagtcagcatctgacaac
ctacaggagagcctggcccaggtcatagtggaaccagggcccccagggccccccgggccc
cccggccccatgggccttcagggaatccagggtcccaagggcttggatggagcaaaggga
gagaagggcacatcaggagaaagaggcccaagtggtctgcccgggccagttggcccaccc
ggccttattgggctgccaggaaccaaaggagagaagggcagacccggggagccaggacta
gatggtttccctggaccccggggagaaaaaggtgaccggagtgaacgtggagagaagggg
gaacgaggtgttccaggtcgaaaaggagtgaagggccagaagggagagccaggaccacca
ggcctcgaccagccatgtcctgtgggtcctgacgggttgccggtgcctggatgctggcat
aagtga
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