Sciurus carolinensis (gray squirrel): 124986836
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Entry
124986836 CDS
T08117
Name
(RefSeq) protocadherin alpha-C1-like
KO
K16493
protocadherin alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
124986836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124986836
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124986836
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
124986836
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124986836
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
BACON
DUF5527
Motif
Other DBs
NCBI-GeneID:
124986836
NCBI-ProteinID:
XP_047411599
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All DBs
Position
6:99212153..99214612
Genome browser
AA seq
819 aa
AA seq
DB search
MMGWEVAVLCFWVSCSAAAKHLEYSVLEETERGVGIGNVATDLKLPAAALSLRNFRILSH
HREPYFGVDLSSGNLVVREPADRERLCGTKAACVLTYELMFENPLELHKMRVHVLDTNDN
SPHFPAGDVQLHIPEFLTPGARFTLPNAQDADEGSNGMLSYSLSPSQHFRLDMGSRVDGS
EYPELVLEKALDREQLATHLLVLTAQDGGLPARSADAQVTIIVVDTNDNAPVFERSVYRT
KVPETAPIGTVLLQVRASDPDEGSNGEVWYSLSNSTQAELRHIFHIHPKSGEVQVTASLG
APETLLEAYIEARDEGAFGLVSTAKLLVEVTDVNDHAPEVDFMTISSSVPEDAAPGTVIA
LLSVKDEDLGPNGRVTCSMSSRGPFQLKASFDNYYSLLTDGPLDHEQMSEYQVLITASDG
GSPPLSTQRTLTVSVADVNDNTPRFPQPQQELFVAENNGPGASLGRVFAQDPDQGENGLV
FYELLDTLNSEGMPASSLVAVEPSSGEITAKISFDFEKLRVFHFQVEGRDGGIPPRSATV
TVNLFVVDRNDNAPVILFPLPRNGSIPVEVVPHSARTGHLITKVVAEDADSGSNAWLSYH
ISQASDSSLFRISANMGELRTARLVLSTDAIKQRVVVVVQDHGDPPLSSSVILGVLLSNS
VPQVLPDFEDVWEPGGQLSTQNLYLVIALACISFIFLGCLLFFMCIKLSQSPGYSSQSCC
HSSEDLRHGRKMASNPCMTSATVDVTTVERLTQTYLYRASLGIGSNNNSLLLRGEHNAAD
LRNLATGVRLNLPVSCIQIPNRKGDHANFNAMVSKFYGI
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgatgggttgggaggtggctgttctatgtttctgggtctcctgcagcgctgccgccaaa
cacctggagtactcagtgttggaggagaccgagcggggcgtggggataggcaatgtcgcc
acggacttgaagttgcccgcggctgcgctgtccttaaggaactttcgcatcctttcccac
caccgggagccctactttggagtggacctgagcagcggtaacttggtggtccgagagcca
gcggaccgcgagcggctgtgcgggaccaaagctgcctgcgtcttgacctatgaactaatg
ttcgagaaccctctggaactgcacaagatgcgtgttcatgtcctggataccaatgacaac
tcacctcattttcctgccggcgatgtgcagctgcacatcccggagtttctgacacccgga
gcccgctttactctccctaatgcccaagatgctgatgagggaagtaacgggatgctaagc
tacagcctaagccccagtcagcactttcgcctggacatggggtcgcgggttgacggcagc
gaatacccggagttggtgttggagaaagcgctggatcgggagcagcttgccacccatcta
ctggtcctcacagctcaggatggtgggctgcctgcgcgctccgcagacgcacaagtcacc
atcatcgtggtggacacaaacgacaacgcacctgtgtttgagcgctctgtataccgtacc
aaggttccagagactgcaccaattgggactgtgttactccaggttcgggcctcggatcca
gatgaaggctctaatggtgaagtctggtactccttaagcaatagcactcaagcagagctg
cgacatatttttcacatacatcctaaaagtggggaggtgcaggtaactgcttcactaggt
gcaccagaaacgctgttggaggcatacattgaggcaagggatgaaggtgccttcggtcta
gtaagcactgccaaactgctggtggaggtgaccgatgtgaatgatcatgccccggaggtg
gacttcatgactatctccagctcagttccagaggatgctgctcctggcacagtgattgct
ctccttagtgtaaaggatgaggaccttggtcccaatggtagagtcacttgtagcatgtcc
agcagaggcccttttcagctgaaggcttcctttgacaactactacagcctgctgactgat
gggcctctcgaccacgaacagatgagcgaataccaggtcctgatcactgcctcagatggt
ggctcacccccactcagcacccaaaggactctcactgtgtcagttgctgatgtaaatgac
aatacaccaagatttcctcaaccacaacaagaactttttgtggctgaaaacaatggccct
ggggcctctttaggtcgtgtgtttgcccaggacccagaccagggggaaaatggccttgtc
ttttatgaactgttggatactcttaattctgaagggatgccagcctcgagcttggtggca
gtggaaccatccagtggggagatcactgccaaaatttcctttgactttgagaaactcagg
gtatttcacttccaagtggaaggccgggatggtggcattcctcccagaagtgcaacagtg
accgtaaacttgtttgtggtagacaggaatgataatgcgccagtcatcttgtttcccttg
cctaggaatggctctatcccagtggaagttgtgccccactctgccagaacaggacacttg
atcacaaaagtggtagcagaggatgcagacagtggttccaatgcctggctctcataccac
atctctcaggcttctgactctagtcttttcagaatttcagccaatatgggagagcttcgt
actgcacgcttagttctgtctacagatgcaattaagcagagggtggtggtagtggttcag
gaccatggtgacccaccactttcctcctctgtcattctgggtgtacttttaagcaattct
gtgcctcaggtccttccagattttgaagatgtctgggaaccaggagggcaactttctacc
cagaacttgtacttagtaattgccttggcctgcatttctttcatatttctggggtgctta
cttttcttcatgtgtatcaagttgagccagagcccaggttattcctctcaaagctgctgt
cactcttcagaggatctgaggcatggaaggaagatggcttctaatccttgtatgacttca
gccacagtagatgtcactacagtagagagacttactcagacatatctctatcgggcctct
ctgggaattggttctaataataacagtttgctgttgcggggggagcataatgctgctgac
ctgagaaatctggccactggggtaagactgaatttgccagtctcctgcattcagattcca
aataggaaaggggatcatgcaaatttcaatgccatggtaagcaaattttatgggatttga
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