Sciurus carolinensis (gray squirrel): 124986882
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Entry
124986882 CDS
T08117
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124986882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124986882
Spliceosome [BR:
ncar03041
]
Complex B
Other components
Prp19-related factors
124986882
Complex C
124986882
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
Nup35_RRM_2
RRM_occluded
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_3
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
124986882
NCBI-ProteinID:
XP_047411677
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All DBs
Position
6:complement(108515986..108525593)
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AA seq
420 aa
AA seq
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MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN
MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLG
DTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV
KWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAV
VNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctctctgggttccaacacctacaacaggcagaactgggaggatgcggacttc
cccattctatgccagacatgtctgggagaaaacccatatatccgaatgaccaaagaaaag
tatggaaaagaatgcaaaatctgtgccaggccattcacagtgtttcgctggtgtcctggg
gtccgcatgcgcttcaagaagactgaagtgtgccaaacctgcagtaaattgaagaatgtc
tgtcagacctgcctcttagacctagaatatggcctgcccatccaggttcgtgatgcagga
ttgtcttttaaagatgacatgccaaagtcagatgtcaacaaagagtactacacacaaaat
atggaaagagaaatttctaactctgatggaacacggccagttggcatgctcgggaaagcc
acatccactagtgacatgctgctcaaattggcccgaaccacaccctattacaaaaggaat
cggccccacatttgctccttctgggtgaaaggagagtgtaaaagaggagaagagtgtcca
tacagacatgagaagcctacagatccagatgacccccttgctgatcagaatattaaagac
cggtattatggaatcaatgaccctgtagcagataagcttctaaagcgggcttcaacaatg
cctcgtctggacccaccagaggataaaactatcaccacattatatgttggtggactgggc
gataccattactgagacagatctcagaaatcatttctaccagttcggagagatccgaaca
atcactgttgtgcagagacaacagtgtgctttcatccagtttgccacaaggcaggctgca
gaagtggctgctgagaagtcctttaataagttgattgtcaatggccgcagactcaatgtg
aaatggggaagatcccaggcagccagaggaaaggagaaagagaaggacggaaccacagac
tctgggatcaagctggagcctgttccaggactgccaggagctcttcctcctcctcctgca
gcagaagaagaagcctctgccaactacttcaaccttcccccaagtggtcctccagctgtg
gtgaacattgccctaccaccaccgccagggattgccccaccccctcccccaggttttggg
ccacacatgttccacccaatgggaccaccccctcctttcatgagggctccaggaccaatc
cactatccttctcaggatcctcagaggatgggagcacatgctgggaaacacagcagcccc
tag
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