Sciurus carolinensis (gray squirrel): 124987030
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Entry
124987030 CDS
T08117
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124987030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124987030
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124987030
Spliceosome [BR:
ncar03041
]
Complex A
U2 snRNP components
U2 related factors
124987030
Complex B
124987030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
124987030
NCBI-ProteinID:
XP_047411865
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All DBs
Position
6:complement(129374158..129457832)
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AA seq
1041 aa
AA seq
DB search
MKFKLRRTKLPGTRSHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRER
SRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKS
KKAENRSRSKEKTESGEGSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWR
EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAY
MEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDA
MEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVN
VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD
LIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKT
LGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEA
DRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCS
DVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHG
GIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG
RAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSS
GFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMA
APGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPT
VSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVT
SKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIK
EELIRLQNSYQPTNKGRYKVL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaaacttcgaagaacgaagctgcctgggactcgaagccattatcggaaacga
tcagcatcacggggacgttctggaagtagatctagaagtcgctcaccctcagataaaaga
agtaaacgtggagatgacagaagatctagaagcagagatagagaccgaaggagagagagg
tctcggagcagagataaaagaagatctcggtcaagggacaggaagcgtctaaggcgttcc
agaagtagagaaagagacagaagccgagagcgaagaagatctcgcagccgagacaggaga
cgttcaaggagtagaagccggggccggcgatcccgatcttcgagtcctggcaataaaagc
aagaaagctgagaataggtctaggtccaaagagaaaacagaaagtggggaaggttctaaa
gagaagaaaaaagacaaagatgacaaggaggatgaaaaagaaaaagatgctggcaacttc
gaccagaataagctggaagaagaaatgagaaagcgaaaagaaagagttgaaaaatggcga
gaagagcaacgtaaaaaggccatggaaaacataggggaattgaaaaaagaaattgaagag
atgaaacaaggaaaaaaatggagtttagaagatgatgatgatgatgaagatgatcctgca
gaagctgaaaaggaaggaaatgaaatggagggtgaggaattagatccattagatgcgtac
atggaagaagtgaaagaagaagtgaaaaagtttaatatgagaagtgtaaaaggtggtggg
ggaaatgaaaagaagtctgggccaacagtcacaaaagttgtcactgttgtgacaaccaaa
aaggcagttgtagattctgataagaagaaaggtgagctgatggagaatgaccaggatgcc
atggagtattcttcagaggaggaagaagttgatcttcagacggcccttacaggctatcag
accaaacagagaaaacttttggagccagttgatcatggaaaaattgaatatgaacctttc
agaaaaaacttttatgttgaagttccagaactagcaaaaatgtctcaagaggaggtgaat
gtatttcgattggaaatggagggtatcacagtcaaaggaaaaggttgccccaaaccaatt
aaatcgtgggtccagtgtggaatttccatgaaaatcttaaattctctcaaaaagcatggg
tatgaaaaacccacaccaatccaaacacaagcgattcctgctataatgtctggacgagat
ttgattggcattgccaagacgggaagtggaaagaccattgcttttctgttgcccatgttt
agacacattatggatcagaggtcattagaagaaggagaggggccaatagctgtcatcatg
actccaactcgagaactggctttacaaattactaaagaatgtaagaagttttcgaagaca
ttgggacttagagtggtctgtgtttatggaggaacaggaatcagtgagcagattgctgaa
ctgaaaagaggtgctgaaattattgtttgcacacctggtcgaatgattgacatgttagca
gctaacagtggtcgggtcacaaatcttcgaagagtgacttatgttgttttggatgaagca
gatagaatgtttgacatgggttttgagccacaggtcatgcgcattgtggataatgtccgt
cctgatcgacagacggttatgttttcagctactttcccaagagctatggaggctttggct
cgcagaatcctgagtaagcccattgaagtacaggttggaggcagaagtgtggtttgctcg
gatgtggagcaacaagtgattgtgattgaagaagaaaagaaattcttaaagttacttgag
cttctaggccattatcaagaatcaggatctgtcattatatttgtggataaacaggagcat
gctgatggtctattgaaggatttaatgagagcatcttacccttgcatgtctcttcatgga
ggtattgatcaatatgacagagacagcattataaatgactttaagaatgggacctgcaaa
cttcttgtggctacttctgttgctgcccgaggtctagatgtgaaacatttgattcttgta
gtaaattacagctgccccaatcattatgaagattatgtacacagagcaggacggactgga
agagcaggcaacaaaggttatgcctatacttttatcacagaagatcaagctcgctatgct
ggtgacataattaaagctcttgaattgtcagggactgcagtgcctcctgatctagagaaa
ctttggagtgatttcaaagatcaacagaaagcagaaggaaaaataattaaaaagagtagt
gggttctctggtaagggattcaaatttgatgaaaccgaacaagctttggctaacgagaga
aagaaattacaaaaagcggctcttggtcttcaagattcagatgatgaggatgctgctgtt
gatattgatgaacaaattgaaagcatgtttaattcaaagaagagagtaaaggatatggct
gctcctggaacatctagtgttcctgctccgactgcaggaaatgctgagaaattagaaatt
gctaagagattggctcttagaatcaatgctcagaagaatttgggcatcgagtctcaggta
gatgtgatgcaacaggccaccaatgcaattctcagaggtggcaccattctggctcccact
gtgtctgcaaaaaccattgcagaacaacttgctgaaaagatcaatgcaaagctcaattat
gtgcctttagaaaaacaagaagaggagagacaggatggtggacagaatgaatcttttaag
agatatgaggaagaattggagatcaatgacttcccacagacggctaggtggaaagttacc
tccaaggaagctctacagagaatcagtgaatattctgaagctgcaattacaatcagagga
acatacttccctcctggcaaagaacccaaggaaggagagcggaaaatttacttggcaatt
gaaagtgctaatgaactggctgtgcagaaagcaaaggcagaaatcaccaggctcataaag
gaagaactgatccgactgcaaaattcataccaaccaacaaataaaggaagatacaaagtc
ttataa
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