Sciurus carolinensis (gray squirrel): 124987056
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Entry
124987056 CDS
T08117
Name
(RefSeq) ATP-dependent RNA helicase DHX29
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ncar03012
]
124987056
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124987056
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124987056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_DHX29
OB_NTP_bind
Helicase_C
DEAD
DSRM_DHX29
HA2_C
AAA_22
HA2_N
nSTAND3
ATPase
AAA_19
AAA_16
Motif
Other DBs
NCBI-GeneID:
124987056
NCBI-ProteinID:
XP_047411937
LinkDB
All DBs
Position
6:complement(44248935..44294012)
Genome browser
AA seq
1368 aa
AA seq
DB search
MGGKNKKHKAPGAAAVRAAVSASKAKSAEAGAAGEAQSKKPVARPPPAAAASTREPRVKQ
GPKIYSFNSANDSGGPANLDKSILKVVINNKLEQRIIGVINEHKKQNNDKGVISGRLTAK
KLQDLYMALQAFSFKTKDIEDAMTNTLLHGGDLHSALDWLCLNLTDDALPEGFSQEFEEP
QPKSRAKFQSPQIQATITPPLQIKTKKQEEDPKIKTKKEEKHMEVNMKEWILRYAEQQKE
EDKSENSKSLEEEEKFDPNERYLTLAAKLVDAKEQAATFKLEKNKQGQREAQEKIRKFQR
EMETLEDHPVFNPAIKVSHQQNEKKKPPVATEGESTLNFNLFEKSAAAVEEEKEKKKESH
DVRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPNPSFEKVPVGRYWKCRVRVIKSDDDVL
VVCPTILTEDGMQAQHLGATLALYRLVKGQSVHQLLPPTYRDVWLEWSDAEKKREELNKM
ETNKPRDLFIAKLLNKLKQQQQQQQQHSENKRENSEDPEESWENLVSDEDFSKLSLESAN
AEDLEPIRNLFRKLQSTPKYQRLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKS
TQVPHFLLEDLLLNEWETSKCNIVCTQPRRISAVSLATRVCDELGCENGPGGRNSLCGYQ
IRMESRASESTRLLYCTTGVLLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLVILKEIL
QKRSDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFHLEDIIEETGFVLEKDSE
YCQKFLEEEEEITINVTGKAGGIKKYQEHIPVHTGASADLNPFYTKYSNRTQHAIFYMNP
HKINLDLILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIA
LHSILSTQDQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQM
SSLVETFVSKASALQRQGRAGRVRDGFCFRLYTRERFEGFMDYSVPEILRVPLEELCLHI
MKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKI
GKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSALAMADSDHLTIYNAY
LGWKKARQEGGYRSEIMFCRRNFLNRTSLLTLEDVKQELIKLVKAAGFSSSSTSTSWEEN
RASQTLSFQEIALLKAVLAAGLYDNVGKIIYTKSVDVTEKLACIVETAQGKAQVHPSSVN
RDLQTYGWLLYQEKVRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQAP
VKIAVIFKQLRILIDSVLRKKLENPKMSLENDKILQIITELIKTENNN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtaagaacaagaaacataaggcgccgggagctgcggcggtccgagccgccgtg
tctgcttccaaagccaaatctgccgaggccggagcagccggggaagcccaaagcaagaag
cctgtggccaggccgccccctgccgccgctgccagcacccgggagccccgagtcaagcaa
ggtccaaaaatttatagttttaattctgcaaatgattctggtggtcctgcaaatctggac
aaatctattttgaaagtggtaattaataataaactagaacaaagaattattggagtgatc
aatgaacataaaaagcaaaataatgacaagggagtgatttctggaagacttactgccaaa
aagttacaggatttatacatggctttacaagcattttcatttaagaccaaggacatagaa
gatgccatgaccaatacactcttacatggaggtgatcttcattctgccttggattggctc
tgtttaaaccttacagacgatgcacttcctgaaggattcagtcaggaatttgaagagccg
caacctaaaagtagggcaaaatttcagtctcctcaaatacaagccactattacacctcca
ttgcaaattaaaaccaaaaaacaggaagaagaccctaagattaagacaaaaaaagaagaa
aaacatatggaagtaaatatgaaagagtggattttgcgatatgctgaacagcaaaaagaa
gaagataagagtgagaattctaaaagtttagaagaggaagaaaaatttgaccctaatgaa
cgatacttgactcttgcagccaaacttgtggatgcaaaggagcaagcagctacctttaaa
ttagaaaaaaacaaacaaggccaaagagaagctcaagaaaaaataaggaaatttcaaaga
gaaatggaaactttagaagaccatccagtattcaacccggcaataaaggtttcacatcaa
caaaatgaaaagaaaaagcctcctgtagccacagaaggagaaagtactttgaactttaat
ttatttgaaaaatctgcagctgctgtggaagaagagaaagaaaaaaagaaagaatctcat
gatgtaagaaattttgactacactgctcgaagctggactggaaaatctcctaaacaattt
ctaatcgattgggttaggaagaatcttcctaagagtccaaatccttcctttgaaaaagtc
ccagtaggtagatactggaaatgtagggtaagagtaattaagtctgatgatgatgtccta
gtagtatgccctacaatcttaacagaggatggcatgcaagctcagcacctgggagctact
ttagccctgtatcgtttagtgaaaggacagtctgttcatcagttactccctcccacttac
cgagatgtttggctggagtggagtgatgcagaaaagaaaagggaagaattaaataaaatg
gaaactaataagccacgtgatctttttattgccaaacttttgaataaattgaaacagcag
cagcaacagcaacaacagcattctgaaaataagagagaaaattctgaagatcctgaggaa
tcttgggaaaatttagtttctgatgaggatttttctaaactgtctttggagtcagcaaat
gcagaagatttggaacctattagaaacctcttcagaaagttacaaagcacacctaaatat
cagagacttctaaaggaaagacaacagttacccgtgttcaaacatagggattcaattgtg
gaaacccttaaaaggcaccgggtagtggttgtggcaggtgaaacagggagtggtaaaagc
actcaagtaccacattttttattggaagatttgcttctaaatgagtgggaaacaagcaaa
tgtaacattgtctgtacccagccccgaagaatctcagcagtgagtttagccaccagagtg
tgtgatgaactgggctgtgaaaatggacctggaggaaggaattctttgtgtggctatcaa
atccggatggaatctcgagctagtgaatctaccaggttactttattgtacaacaggagtt
ttgctaaggaaacttcaagaagatggtcttctaagtaatgtgtctcatgttattgttgat
gaagttcatgaaagaagtgtccaatcagatttcctactggttatcttgaaggaaatttta
cagaaacgttctgatctacacttgattctgatgagtgccactgtggacagtgaaaagttt
tctacatatttcacacattgccctattcttagaatttcaggaagaagttatcctgttgag
gtttttcatcttgaagatataatagaagaaacaggctttgtattggaaaaagactcagaa
tattgtcaaaaatttctggaggaggaagaagaaataaccattaatgttactggcaaagct
ggaggaataaaaaagtaccaggaacacatcccagttcacactggagcaagtgctgattta
aatcctttttacacgaagtacagcaaccgcactcagcatgctattttctacatgaatcct
cataaaatcaacctggatctcattttggagcttcttgtatatttagacaaaagtccccaa
ttcagaaatattgaaggagcagtattgatctttttaccaggtcttgctcatattcaacag
ttgtatgatctcctgtcaaatgatagaagattttattctgaacgatataaggtgatagct
ctgcattctattctttcaactcaagatcaagcagcagcattcacacttcctcctccagga
gtcaggaagattgttttagcaacaaatattgcagagacgggtatcactattccagatgtt
gtatttgtaattgatactggaagaacaaaagaaaataagtaccatgaaagcagtcaaatg
agttccttggttgaaacttttgtcagtaaagcaagtgctctgcaacgccaggggagagct
gggagggtccgagatggcttctgcttccgactgtacacaagagaaagatttgaaggcttt
atggactattctgttcctgaaatcttgcgtgtacctctagaagaattatgtcttcatatt
atgaaatgcaatcttggttctcctgaggatttcctatctaaagccttagatcctcctcag
cttcaagtaattagcaatgcaatgaatttactccgaaaaattggagcttgtgaattaaat
gaacccaaactgaccccattgggccaacatcttgcagctttacctgtgaatgtcaaaatt
ggcaagatgcttatttttggtgccatatttggttgtcttgatccagtggcaacactggca
gcagttatgacagagaagtctccttttaccacaccaattggtagaaaagatgaagcagat
cttgcaaaatcagctttggctatggcagattcagaccatctgacaatctacaatgcatat
ctaggatggaagaaagcacggcaagaaggaggctatagatctgaaatcatgttttgtcga
aggaactttcttaatagaacatccctgttaaccctagaggatgtaaagcaggaattaata
aagttggttaaagctgcaggattttcatcttcctcaacttctaccagctgggaagaaaac
agagcctcacagaccctctctttccaagaaattgcccttcttaaagctgtcttggctgct
ggactatatgataatgtgggaaagataatctatacaaagtcagtggatgttacagaaaaa
ttggcttgcatcgtggaaacagcccaaggcaaagcacaagtacatccatcctcagtaaac
cgtgatttacaaacttatggatggctcttataccaggagaaggtaaggtatgccagagtg
tatctgagggaaacaaccctaataaccccttttccagttttactttttggtggtgatata
gaagttcaacacagagaacgtcttctttctattgatggctggatctattttcaggcccct
gtaaagatagctgtaattttcaagcagctaagaattctcattgattctgttttaagaaaa
aagcttgaaaatccaaagatgtcccttgaaaatgacaagattctacagatcattacagaa
ttgattaaaacagagaacaataattga
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