Sciurus carolinensis (gray squirrel): 124987058
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Entry
124987058 CDS
T08117
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124987058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124987058
03041 Spliceosome [BR:
ncar03041
]
124987058
03009 Ribosome biogenesis [BR:
ncar03009
]
124987058
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124987058
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124987058
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124987058
Spliceosome [BR:
ncar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124987058
Complex C
U4/U6.U5 tri-SnRNP related factors
124987058
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
Pre-60S particles
Helicases
124987058
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124987058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
124987058
NCBI-ProteinID:
XP_047411941
LinkDB
All DBs
Position
6:44293977..44387145
Genome browser
AA seq
1044 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAATTKKDKEKEKGKWKGLPGSAEKAGKRFDAKLQSESANSG
KNKRDADFEGTDESIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEDYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKATGMIAIDIKSAKRE
LKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFN
DLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETY
LSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTE
LENKFAEGITKIKRDIVFAASLYL
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgttcggggatgagctgttcagcgtgttcgaagatgattccaccactgcg
gccacaaccaagaaagacaaagaaaaggagaaggggaaatggaagggcttgccggggtct
gcagaaaaggccgggaaacgttttgatgccaaattgcaatcagagtcagctaatagtgga
aaaaataagagagatgcagatttcgaaggtacagatgaatctatttttggaaagaagccc
aggatagaagaatcaataactgaagacttgagtttggcagacctgatgcctagagttaag
gtacagtcagttgaaactgttgaaggatgtacacatgaggttgcgcttcctgcagatgag
gattatttaccacttaaacctcgggttggaaaagcagcaaaggagtacccgttcattctt
gatgctttccaaagagaagccattcagtgtgttgataataatcagtctgttttagtgtct
gcccatacgtcagcagggaagactgtatgtgctgagtatgccattgcattggccttaagg
gaaaagcaacgtgtaatatttaccagcccaattaaggctctgagtaaccagaagtaccgt
gaaatgtatgaagaatttcaagatgttggtctcatgactggagatgtgactattaatcct
acagcatcttgtcttgttatgactacagagattttaagaagtatgctgtacagaggttct
gaagtaatgcgagaagttgcttgggtcatttttgatgaaatccattacatgagagattca
gaacgaggcgtggtatgggaagaaactattattttgcttcctgataatgttcattatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtcatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggccttcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggggac
cagaagggacggaaagggggaacaaaaggaccatcaaatgtattcaagattgtgaaaatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaaaaaggattgtgaa
gcttatgctcttcaaatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtgttcagtaacgcaattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgcctgctagaactgttttgtttacaaat
gcccgtaaattcgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaagaagaggaatggatgataggggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacagctacttaagggctcagctgatcctctgaat
agtgctttccatttgacttacaacatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatctttctaccagtttcagcattatagagcaattccagga
gtagtggaaaaggtaaagaactcagaacaacaatataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagattatattcataaaccaaaatactgcttaccatttctacagccaggccgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgaactggatcccttatacgtagtagaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaaacct
gatgagaaaggagagatgcaggtagtcccagttttggtgcatctcctgtctgctatcagc
agtgtcaggctttacattcctaaggaccttcggccagtggacaatagacaaagtgttcta
aaatcaatacaggaagttcagaagcgttttcctgatggtgttcctttattagatcctatt
gatgatatgggtattcaagatcaagggctgaaaaaggtcattcagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagccacaggtatgattgcaatagatattaaatctgcaaaacgagaa
ttgaagaaagcaagaactgttctacaaatggatgaactcaaatgtcgcaaacgtgtttta
agaaggttgggatttgctacttcttctgatgtcatagagatgaaaggaagagtggcttgt
gagataagcagtgctgatgagcttcttctaactgagatgatgtttaatggacttttcaac
gacctttctgcagaacaagcaacagcattattaagctgctttgtgtttcaagagaattct
agtgagatgcccaaattgacagaacagttagcaggtccacttcgacaaatgcaggaatgt
gctaaaagaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttac
ctcagttcattcaaacctcacttaatggatgtggtatatacctgggcaactggagctacc
ttcgcccacatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgagg
cgcctggaagaattgcttcgacagatgtgtcaggcagcaaaagccattggaaatactgag
ctggaaaataaatttgctgaaggaatcaccaaaatcaagagagatatcgtgtttgccgcc
agcctctacttataa
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integrated database retrieval system
