Sciurus carolinensis (gray squirrel): 124987095
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Entry
124987095 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: histone-binding protein RBBP4-like
KO
K10752
histone-binding protein RBBP4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
ncar03083
Polycomb repressive complex
ncar04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124987095
03083 Polycomb repressive complex
124987095
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
124987095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124987095
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124987095
Histone modification proteins
HAT complexes
HATB complex
124987095
HDAC complexes
Sin3A-HDAC complex
124987095
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
124987095
PRC2.2
124987095
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
124987095
Heterochromatin formation proteins
Other heterochromatin formation proteins
124987095
Chromatin remodeling factors
NuRD complex
124987095
NuRF complex
124987095
NuRF complex (fruit fly)
124987095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
Beta-prop_RIG_1st
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
eIF2A
WD40_RFWD3
MIOS_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Ribosomal_L34e
Motif
Other DBs
NCBI-GeneID:
124987095
NCBI-ProteinID:
XP_047412014
LinkDB
All DBs
Position
6:complement(90851002..90852637)
Genome browser
AA seq
391 aa
AA seq
DB search
MNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVXGTHTSDEQNHFVIASVQ
LCNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRASYMPQNPCIIATKTP
SSDVLVFDYTKHPSKPDPCGECNTDLRLCGHQKEGYGLSWNPNLSGHLLSASDDHTICLW
DISAVPKEGKMVDAKTIFTGRHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA
EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA
SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISYFSWNPNEPWVICSVS
EDNIMQVWQMAENIYNDEDPEGSVDPEGQGS
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccccttttctttatgatttggtgatgacccatgctctggagtggcctagccta
acagcacagtggcttccagatgtaaccagaccagaaggaaaagatttcagcattcatcga
cttgtcncggggacacacacatcagatgaacaaaaccactttgtgatagccagtgtacag
ctctgtaatgatgatgctcagtttgatgcatcacactacgacagtgagaaaggagaattt
ggaggttttggctcagttagtgggaaaattgaaatagaaatcaagatcaaccatgaagga
gaagtaaacagggctagttatatgccccagaacccttgcatcattgcaacaaagactcca
tccagtgatgttcttgtttttgactatacaaagcatccttctaaaccagacccttgtggg
gagtgcaacacagacttgcgtctctgtggacatcagaaggaagggtatgggctttcttgg
aacccaaatctcagtgggcacttacttagtgcttcagatgaccataccatctgcctatgg
gatatcagtgccgtcccaaaggaaggaaaaatggtcgatgcgaagaccatctttacaggg
cggcatctgctccatgagtccctgtttggatcagttgctgatgatcagaaacttatgatt
tgggatactcgttcaaacaatacttccaaaccaagtcactcagtagatgctcacactgct
gaagtgaactgcctctctttcaatccttatagtgagtttatacttgccacaggatcagct
gacaagactgttgccttgtgggatctgagaaatctgaaacttaagttgcattcctttgaa
tcacataaggatgaaatattccaggttcagtggtcacctcacaatgagactattttggct
tctagtggtactgatcgcagactgaatgtctgggatttaagtaaaattggagaagaacaa
tccccagaagatgcagaagatggcccaccagagttattgtttattcatggtggtcacact
gccaagatatcttatttctcctggaatcccaatgaaccttgggtgatttgttctgtatca
gaagacaatatcatgcaagtgtggcagatggcagagaacatctataatgatgaagatcct
gaaggaagtgtggatcctgaaggacaaggatcctag
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