Sciurus carolinensis (gray squirrel): 124987306
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Entry
124987306 CDS
T08117
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like isoform X1
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncar00535
]
124987306
04091 Lectins [BR:
ncar04091
]
124987306
Proteoglycans [BR:
ncar00535
]
Cell surface proteoglycans
Others
124987306
Lectins [BR:
ncar04091
]
C-Type lectins
Others
124987306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DUF5527
Motif
Other DBs
NCBI-GeneID:
124987306
NCBI-ProteinID:
XP_047412437
LinkDB
All DBs
Position
6:complement(43784018..43849658)
Genome browser
AA seq
2402 aa
AA seq
DB search
MGLNSCRVQAALSAPVQPPRGWRRRPPAGFRSAAAGGTGRGRAGSSASAWERARAAAAGW
GGWGPAALSCSPPAWGSAGRSEVRAHLGTGEQVLLSEQRVHMDDLVWHSVALYYVKDSIS
LVVDKHYETASQISDGMHNSNFHHGIYIGGHGGLSVPYLDGKIPNFRGCMEDVKFNQREI
LMSLRSYPGFKKVYEVSLGCNDEFFAGEDEAINFFSSRSYVTFPEWKVQGGGLLEFALQT
GTQQALLLFQSGREGDFVALEIHEGVLKAYVGRSENKTQFSSFSLVSDNEWHAIQLKFRE
RYMDLVVDEHRVRTLLPLQSKPFVSKGPLFVGGLDTQMWEKVKRLELASVLRKSAQGISL
KGCIRDFVTNSEKRALRDALISKDISVGCKTKSVDNADPPMTVTETLLQSEVSPSTADPG
TIKPFIQDESSHFLVLNNMEVQEGGRALLEQRHIDINEELKDLEVNYSQILFKIEEMPVH
GFLQLDVSPEPQMEKAFTMLDLWQGKVWYVHDGSEEPMDHFTFLVSFHGKKEMPSYLQNH
IPYVFNIIVIPVNDPPSLKLQEGNLLVLFENAKKPLTPNIIQVSDPDTVPSSLSFSVLGS
FNSEAGFLENVNYPGRPINGFTHVDLRDGNIFYVHRGHRNSRIVLRASDGELVSNTAVLR
VMAVPWDFEVANRTGVVVSQGGSILITRNNLSVEVNGERPEMETRYDITHPPQFGQIQLR
GLNGEWKQVRTFSQRSIDRGRVWYYSTFRELQQENVSDHFKFKVSIEGKVSKELIFPVTI
QWLKFTLLKNVPLEVSNTNKQILNSDHLQAATQGVEVAKRELHFKLLTPPKKGKLLRGKK
VLKTNSIFSQKDITDSKISYEPQERPREDSQDCFRFLMIAKHIESNDYTFRINFKTDRTH
IILTNKGLLVKEGEGKLITKSELFVQTLDNQIFQYKVTKGPQHGKLKLMNSSDSLKSNDS
ITTFTDQDIAGEQLMYIHDDSETQWDEFFLVASAKGSGQEGVARDPDLEQLSTEIKVTVS
VELKNDERPVRVVDKVFHVVRNGQRLLTLEDLCYHDPDLDFDDVQLLYTRRGIPNGDLVR
TSDPTQKLYQFRQEDLRDGHVLFRHWGADSARFLLLVTDGVHYTSSLLEVSVSDPFVQIA
NNTGLLVQRGKDSCLSTANLSVTTNQDVRTDLEVEFHVMWPPKHGRVLVNNSVSHSFSQH
DLKQGQVVYRHDGNGNFDVFNLTVKVKDTHLEVSVCVQVCLDGQHPHTQVLHSKTLVVEE
GKRVKLNRRWLQAGNEANSPSETVFIVSSPPRHGYLQIPEPEDGNLGADKKSALRFTQRD
VDDGRVLYVQTAPDQQQDRFSLDVINGSQVVSAVEILLDIVPKWIPLEVQNFTVQEGGSK
ALLEDDLKISNKYFEGFDCEFVLLESPKHGYVQSSDFPRVKLMKFTRKQVEKELIYYVHD
DSEELLDNFTIFASSSELGKQSLPQTLFVTVESVNDKAPVITANKILQVWVDSITEVTRG
ELCAEDGDSSPQDLVYWVTPPSNGHLAVKSFPGSSIRNFTQAQINKGQLVFVHSGAMSGG
FSFQVTDGLNFAPRQIFSITARILVISLEVNRGLSIFPGSVKPLSSRDLKAVTNDVDNAG
NRSIIFTVVSSPRLGRLLRMNSDNSTEEVSVFTQYLVSEGLILYQHMDRVNPGWTAEDSF
TFTVSSPPAAALGPKEFLISISYEIDEPGRQSCLLKNTGAAVKEGDKVLIDQSKLDASNL
LFKLPESQRSSYEIWFQVISLPYHGTIMVGERNITKGKPNFSQSLINKFGIMYLHDDSES
LADSFTFAVWPNEKSKSVNKPETDFIEEMFNITVTPVNDQAPELKTKGLRRKVLQGSRLV
VGSEILKVEDLDNPPDEIRYTIIRNPNNGFLAMAYHPDTPVHQFTQADIDDSQVLFIQDG
SPSSGVFYFSVTDGEHRPLYKLFHLDVIPIFITLVNLTDLLVPQGQTTVPITKAHLSAVT
NGRSPQIIYWITQPLQHGHLLIENQVVTSFGQEDLDSGRLSYHMTNLTASEDQLQFSLFT
PESNLTGQTLGIRVQPLLWVTSNLKIVNGVAHQLRRKDLDATELANMTNSDPRFEVTEPP
VHGRLVRRLARSTMMEDAALFTQRDIDQGLLVLDPHANLSGTDMLNDSFTFLLRADHVQP
AIGYLPFTIVPPAPWLLQTFAPDVPLLVNGDNLVTSVLLQKKSVVSSGPVPLTQMETLGK
LTQTRWHGADPWVRHSGEEPSLDDKVFPTRVIWPPAATKIDPAAPTQLKESSYPLLVIIP
LAAVFLLLTVTVVALCVWLLGQREEKAKPLIKPQADLEPPIPSCRPERSRTVPTVTVTPL
IKSSSSPPASLFRAPPCEHMASPVAEPMGRCAPWETWKNLDPDMIKLCRQTNPTLKHNQY
WV
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atggggctcaacagctgcagggtgcaggcggctctctccgcccccgtccagcccccgcgc
ggttggaggcggcgtcccccggccgggttccggagcgcggcggccggcgggacggggagg
gggcgtgcaggtagctcggcctctgcctgggagcgagcgcgggccgccgcggcgggatgg
ggcggctgggggcccgccgccttgtcctgctcgccgcctgcctggggctctgcggggcgc
tcggaggtgagagcgcatttgggtacaggtgaacaagtgctcctttctgagcaaagagtt
catatggacgatttggtttggcattcggtggcactgtactatgttaaagatagtatttcc
ttggttgttgacaaacattatgagacagctagccaaatatctgatgggatgcataattcg
aactttcaccatggaatctacataggaggccacgggggactcagtgtgccttacctagat
ggaaagatccccaacttccggggatgtatggaggatgtcaaatttaaccaaagggagatc
cttatgtccctcagatcttaccctggttttaagaaggtttatgaggtttcactagggtgc
aacgatgagttttttgcaggggaggatgaagccatcaatttctttagctctagatcctat
gtcaccttcccagaatggaaagtgcaagggggagggctattggaatttgctttgcaaact
ggaacccaacaagccttgcttttatttcaatcaggtagggaaggggattttgttgctttg
gaaatacatgaaggtgtactgaaggcttatgtaggaagaagtgaaaacaaaactcagttt
tcttcttttagcttagttagtgacaatgaatggcatgctattcaactcaaattcagggaa
agatatatggacttagtggtagatgaacacagggtgaggactttgctgcctttgcaaagc
aaaccatttgtgtccaaaggccccctctttgtgggaggtcttgatactcaaatgtgggaa
aaagtgaagaggttagaactggcctctgtgcttagaaaatctgctcaaggaatctctttg
aaggggtgcataagagactttgtaaccaactcagaaaagagagcactaagggacgccctc
atttccaaagatatttctgttggatgcaaaaccaagagtgttgataatgctgatcctcct
atgacagtgacagaaaccctgcttcagtcagaagtttccccttccactgcagaccctggg
accatcaagcctttcatccaagacgaaagtagccattttctggttttgaataacatggag
gtccaagaaggtggacgagccctactggaacaaaggcatatagacataaatgaggaactc
aaggatttggaagtcaattattctcaaatactgtttaaaatagaagaaatgcctgttcat
ggattccttcaattagatgtttcacctgagccacaaatggagaaggcttttactatgttg
gatttgtggcaaggaaaagtatggtatgtgcatgatggttcagaggaacctatggatcat
ttcacatttttggtctctttccatggcaagaaggaaatgccatcgtacctgcagaaccac
attccatatgtgtttaacattattgtcattccagtgaacgatcccccatcccttaaactc
caggaaggaaatttgctggtcctgtttgagaacgcgaagaaaccactgaccccaaatata
atacaggtgtcagatcctgacacggttccttcgagtcttagtttttcagttcttggcagc
ttcaattcagaagctggatttttagaaaatgttaattatcctgggagacccattaatggc
tttacacatgtggatttaagagatggcaacattttctacgtgcacaggggtcatcgaaac
tctcggattgttctgagagcaagtgatggtgagctggttagcaatacagctgtgttacga
gtcatggctgttccttgggactttgaagtggccaataggactggtgtggttgtatcacag
gggggctccattctgattacacggaataacttgtcagtggaggttaatggtgaacgaccc
gagatggagactcggtatgacatcacacacccaccacagtttggccagattcagcttcgg
gggttgaacggagaatggaaacaagttaggaccttttctcagcgttccattgatcggggt
agggtctggtactatagtacattccgagaactgcagcaagaaaatgtttctgatcacttt
aaatttaaagttagcatagaaggaaaagtcagcaaagagctcatatttcctgtgaccata
caatggctaaaatttacacttctgaaaaatgttcctctagaggtcagtaacacaaacaag
caaatactgaattctgatcatttgcaggctgcaacacagggtgtggaagtagccaagagg
gagctacattttaagttactgaccccacctaagaaaggaaaattgctacgtggcaagaaa
gttctcaaaacaaactcaatcttcagccaaaaagatattacagactccaagataagttat
gaacctcaggagagaccaagggaagactcacaggattgttttaggtttttgatgattgca
aaacacatagaatcaaatgactatactttcagaataaactttaaaacagatagaacacac
atcattttaacaaacaaaggattgcttgtaaaagaaggagaagggaagttaattacaaaa
tctgaattatttgttcaaaccttggacaatcagatcttccaatacaaagttaccaagggt
cctcaacatggaaaactgaaattgatgaactcttccgattctctgaaaagtaatgacagt
atcactacattcactgatcaagacatagcaggtgaacagctgatgtatattcatgatgac
tctgagacccagtgggatgaattctttcttgtggcctctgccaaaggttcaggccaagag
ggagtggccagggatcctgacttggagcaattgtctacagaaatcaaagtcactgtctct
gttgagttaaagaatgatgagaggccagtgcgcgtggtagataaggtcttccacgtcgtg
cggaatggccagcgcttgctgacgctggaagatctctgttaccatgaccctgacttagat
tttgatgacgtgcagttgctctacacccggcggggcatcccaaatggggatttggtacga
accagcgaccccactcagaaactctaccagttcaggcaggaagacctgcgggatggacat
gtgctcttcaggcactggggggcagactctgcccgcttcctactgttagtgactgatggt
gtccattacacgtcatcccttcttgaggtcagtgtgtcagacccctttgtccagatagcc
aataacacagggctgcttgtccagagaggaaaggacagctgcctcagcacagccaacctg
agtgtcaccacaaaccaagatgtcagaacagatcttgaggtcgaattccacgttatgtgg
cccccaaaacacggcagagtcctggtcaacaattctgtgtcccattcattttcccagcat
gacctgaagcaaggacaagtggtctataggcatgatggcaatggcaactttgacgtgttc
aacctgacagtgaaagttaaagatacacatttggaagtgagtgtctgtgttcaggtgtgt
ttagatggtcagcaccctcacacccaggttctgcacagcaagacccttgtagttgaagaa
ggaaaacgagtaaaactgaatagaaggtggctccaggctggaaatgaagccaatagtccc
tcagagacagtgttcatagtcagttctccaccaaggcatggatacctccaaatacctgaa
ccagaagatggtaacttgggtgcagacaaaaagtccgctttgaggtttacacaacgggat
gttgatgatggcagggttctttatgtgcagacagcgcccgaccaacagcaggatcgtttt
tccctagatgtgataaatggttcccaagtggtgagcgcagtggaaattctgttggatatt
gtccctaagtggattcctctggaggtacaaaatttcacagtccaagaaggaggatccaaa
gcacttctggaagatgacctcaaaatttcaaacaagtattttgagggatttgactgtgaa
tttgttctacttgaatcaccaaaacatggttatgttcaaagttctgattttccaagagta
aagctaatgaaatttaccaggaaacaggtggaaaaggaactgatttactatgttcatgat
gatagtgaggagcttcttgataatttcaccatctttgcaagtagttcagagcttggaaag
cagagtctgccccaaaccctttttgtgactgttgaatctgtaaatgacaaagctccagta
ataacagccaataagatcctccaggtgtgggtggattctatcacagaagtgacaagaggt
gaactctgtgcagaagatggggattcctccccacaggacctggtctactgggtcactcca
cccagcaatggtcacctggctgtcaagtcctttcctggaagcagcatccggaacttcacc
caggctcaaatcaacaagggccaactagtgtttgtacactctggagcaatgtcaggaggc
tttagttttcaggttactgatggtctgaactttgcacctcggcaaatctttagcatcact
gctcgtatcttggtcattagcttagaagtcaacagaggactgagcatctttccaggttcc
gtgaagcctctttcatctcgtgacctgaaagctgtgactaatgatgtagacaatgcagga
aacagatctataattttcacagttgtaagttcccctagacttgggaggttgctgcgaatg
aactctgacaacagcactgaggaggtttccgtttttacccaatatctggtcagtgaaggg
ctgatattataccagcatatggatcgtgtgaacccaggttggactgcagaagactccttt
acgttcacagtgtcctctccacctgcagcagccctaggtcccaaggagttcctcattagc
atttcatatgaaattgatgagcccggtcggcagagctgcctgctcaaaaacacaggagct
gctgtcaaggagggagacaaagttctaattgaccaatctaagttagatgcttccaacctc
ttatttaaactccctgaatctcagcgctcttcctatgaaatttggttccaggttatatct
cttccttatcatggaaccattatggttggagaaagaaacattaccaaaggaaaacctaat
ttttcccagtctctaattaataaatttggaatcatgtaccttcacgatgactctgaatca
ctggctgatagttttacctttgctgtttggccaaatgaaaaaagtaagtctgtcaacaag
ccagagactgacttcattgaagagatgtttaacatcaccgtcactccggtgaatgatcag
gcaccagaattaaagacaaaaggacttcggaggaaagttctgcagggcagtaggttggtt
gtgggatctgaaatcctaaaagtggaagatctagacaacccccccgatgagatcagatat
acaatcatccgtaaccccaataatggctttttggcaatggcttaccatccagacacacct
gttcatcaatttacacaagctgacattgatgactctcaggtgttgttcatacaagatgga
agcccgtcctctggagtgttttactttagtgtgactgatggtgaacaccgccctctctac
aagctcttccacctggatgtcatacccattttcatcacccttgtgaacctcacagacctt
cttgtcccacaaggccagacaaccgtccctatcaccaaggctcacctgtcagcagtgaca
aatggaaggagcccccagatcatttactggataacacagcctctccaacatgggcacctg
ctgattgaaaaccaggtggtcaccagctttggacaggaggatctggattcaggaagacta
tcctaccacatgacaaacctcacggcctcagaggaccagctacagttctcactgtttaca
ccagaaagcaacctgacaggacaaaccctgggcatcagagtgcagccattactgtgggtt
acgtcaaatctgaaaattgtcaacggggtggctcatcagctgagaagaaaggaccttgat
gctactgagctcgctaacatgaccaacagtgatcccagatttgaagtgacagagccccct
gtccatgggagacttgtacgaagactggctcgcagcactatgatggaagacgcagctctc
ttcactcagagggacattgaccaagggctgttggtgcttgatccacacgccaatctatca
ggcacagacatgctgaacgattccttcactttcttgctcagggcagatcatgtacagcca
gcaatcgggtacctccccttcaccatcgtgccacctgccccctggcttctgcagactttt
gcaccagatgttcctttactagtcaatggtgataaccttgtgacctcagttctcttgcag
aaaaagtctgtggtttcttcaggacctgtgccactgacacagatggaaactctggggaag
ctgacccagactagatggcacggagcagatccctgggtacgacacagtggcgaagagcca
agtttggatgacaaggtctttcctaccagagtcatttggccacctgctgctaccaaaatt
gaccctgcagcacccactcagctcaaagaaagcagttaccctctgttggtcattataccc
ttggctgcagtgttcctgctgctaacagtgacagtggtggccttgtgtgtctggctgctg
ggccagagagaagaaaaggcaaaacctcttatcaagccccaggccgacctagaaccacca
atcccaagttgtaggccagaaaggagcagaacagttcccactgtcacggtgacacccctc
ataaaaagctccagcagtcccccagccagtcttttcagggctccgccatgtgaacatatg
gcctctccagtggctgagccaatgggaagatgtgctccttgggagacatggaagaacctg
gatcccgacatgatcaagctctgccgacaaaccaacccaacgctgaagcacaaccagtac
tgggtgtag
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