Sciurus carolinensis (gray squirrel): 124987359
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Entry
124987359 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: semaphorin-5A-like
KO
K06841
semaphorin 5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
124987359
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Gene cluster
GFIT
Motif
Pfam:
TSP_1
Sema
TSP1_spondin
TSP1_2
TSP1_CFP_C
PSI
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
124987359
NCBI-ProteinID:
XP_047412526
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Position
6:complement(7374794..7817882)
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AA seq
1074 aa
AA seq
DB search
MKGACAIAWLFSSLGVWRLARPEVPATAQCQRAEHPIVSYKEIGPWLREFRAKNAVDFSQ
LTFDPGQKELVVGARNYLFRLQLEDLSLIQAVEWGCDEATRKACYSKGKSKEECQNYIRV
LLVGGDRLFTCGTNAFTPVCTNRSLSNLTEIHDQISGMARCPYSPQHNSTALLTAGGELY
AATAMDFPGRDPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH
DCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFSYNELQSTFLLPEL
DLIYGIFTTNVNSIAASAVCVFNLSAISQAFNGPFKYQENSRSAWLPYPNPNPNFQCGTV
DQGLYVNLTERNLQDAQKFILMHEVVQPVTPVPTFMEDNSRFSHVVVDVVQGRDTLVHIL
YLATDYGTIKKVRAPLNQSLGSCLLEEIELFPERRREPIRSLRILHSQSVLFVGLREHVV
KIPLKRCQFHHTRSTCMGAQDPYCGWDVVMKRCTSLEDSLSMTQWEQSLSACPTRNLTVD
GHFGPWSPWTPCTHTDGSAVGSCLCRSRSCDSPAPQCGGWQCEGPSMEIANCSRNGGWTP
WTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWG
PWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNVCPELKKTTPWTPWTPVNISD
NGGHYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSA
HTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNVLPCPV
DGMWSCWSSWSKCSATCGGGHYMRTRSCTNPAPAYGGDICLGLHTEEALCSTQPCPESWS
EWSDWSACDASGVQIRXRQCILLFPVGGQCSGNTTESRPCVFDSNFIPEVSVARSSSVEE
KRCGEFNVFHMLAVGLSSSILGCLLTLLIYTYCQRYQQQAHDATVIHPVSPAPLNTSITN
HINKLDKYDSVEAIKAFNKNNLILEERNKYFNPHLTGKTYSNAYFTDLNNYDEY
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcgcctgcgccatcgcctggctgttctcgagcctgggggtgtggagactcgcg
cggccagaggtgcccgccacggcgcagtgccagagagctgagcaccccatcgtttcctac
aaagaaattggcccctggttacgggagttcagagcgaagaatgctgtggatttctcgcag
ttaacatttgacccaggacagaaagaacttgttgtaggagcaaggaactacctcttcaga
ctgcagcttgaagacctgtctctgatccaggccgtggagtggggatgtgacgaagccacc
aggaaggcctgttacagcaagggcaaatccaaggaggagtgtcagaactacatccgggtg
cttttggtgggcggcgaccggctcttcacctgcgggacaaacgccttcacacctgtgtgc
accaaccgctcgttgagtaacctgactgagatccatgaccagatcagtggcatggcccgc
tgtccctatagtccccagcacaactccacggctctgctcacggctggcggggagctctac
gccgccacggccatggatttcccagggcgtgatcctgccatttaccgaagcctggggatt
ttgccgcctctccgcaccgcacagtacaactccaaatggctcaacgaaccaaacttcgtg
tcctcctatgacatcggaaatttcacctacttctttttccgagaaaatgccgtggagcat
gactgtgggaaaactgtgttctccagagccgcccgggtctgcaagaacgacatcgggggg
cgcttcctgctggaggacacctggaccaccttcatgaaggcgcgcctgaactgctcgcgg
cccggggaggtgcccttctcctacaacgagctgcagagcaccttcctcctgcccgagctg
gatctcatctacggcatcttcaccaccaacgtgaacagcattgcggcctcagctgtgtgc
gtcttcaacctgagcgccatctcccaggccttcaacggacccttcaagtaccaggagaac
tctcgctcggcctggctgccttatcccaaccccaaccccaatttccagtgtggcaccgtg
gaccaaggcctgtatgtgaatctgacagagaggaacctgcaggatgctcagaagttcatt
ctcatgcacgaggtggtacagccggtgaccccagtgcccaccttcatggaggacaacagc
cgcttctcgcacgtggttgtcgacgtggtgcagggcagagacacgctggtccacatcctc
tacctggccacagattatggcaccattaaaaaagtgcgcgcgccgctgaaccagtccttg
ggcagctgtttgctggaagagatcgagctcttcccagagaggcggagggagcccatcagg
agcctgcggatcctgcacagccaaagcgtcctgttcgtggggctgcgggaacatgtggtc
aagatccccctgaagaggtgccagttccaccacacacgcagcacctgcatgggagcccag
gacccttactgtggctgggacgtggtgatgaagagatgcacgagtctcgaggacagcctg
agcatgacacagtgggagcagagcctgtccgcctgcccgaccaggaatctcaccgtggat
gggcactttggcccatggtctccatggacaccctgcacgcacacggatgggagcgccgtg
ggatcctgcctctgccggtcccgttcctgtgacagcccggccccccagtgtggtggctgg
cagtgcgagggccccagcatggagatcgccaactgctccaggaacggaggctggaccccc
tggacctcgtggtcaccctgcagcaccacctgtgggatcggcttccaggtgcggcagcgg
tcttgcagcaaccccacccccaggcacgggggccgggtgtgtgtgggccagaaccgcgag
gagagatactgcaatgagcatctgctgtgcccgccgcacatgttctggacaggctggggt
ccttgggaaaggtgcacagcccagtgtgggggtggcattcaagctcgccgcaggacctgt
gagaatgggcccgattgtgcaggctgcaacgtggaataccaaccttgtaacaccaacgtg
tgtcctgagctgaagaagaccacgccctggacgccctggacgcccgtcaacatctctgac
aatggcggccactatgaacagcggttccggtacacctgcaaagcccgcctgcctgatcca
aatttgctggaggtgggaaggcagagaatcgagatgcgatactgttctagtgatgggacc
agcggctgctccaccgacgggctgtctggggacttcctgcgagccgggagatactcagcc
cacactgtcaacggggcctggtcagcctggacatcgtggtcacagtgcagccgcgactgc
agcaggggcattcggaaccggaagcgcgtctgcaacaatcccgagcccaagtacgggggc
atgccttgcctgggcccgtccctggagtaccaggaatgcaacgtcctgccctgcccagtg
gacggcatgtggtcctgctggtcctcctggtcaaaatgctcagccacgtgtggcggtgga
cactacatgaggacccgctcctgcacgaacccagccccagcctacggaggggacatctgc
ctgggactgcacacagaagaggcgctctgcagcacgcagccctgcccagaaagctggtca
gagtggtcagactggtctgcgtgcgacgcgtctggcgtccagatccgtngccgccagtgc
atccttctgtttcctgtgggtggccagtgttctggaaacaccacggagagccggccatgc
gtttttgactctaatttcatcccagaagtgtctgtcgcaagatcaagcagtgtagaggag
aaaaggtgtggagagttcaacgtgttccacatgctcgccgtggggctcagcagctccatc
ctcggctgcctcctcaccctgctcatctacacctactgccagcggtaccagcagcaggcc
cacgacgccactgtcatccaccccgtctctcccgcgcccctcaacaccagcataaccaac
cacatcaacaagctggacaagtatgactcggtggaggccatcaaggcatttaacaaaaac
aacttgatcctagaggaaagaaacaaatacttcaacccgcacctgacggggaagacctac
tccaacgcctacttcacagatctcaataactacgatgagtactag
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