Sciurus carolinensis (gray squirrel): 124987415
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Entry
124987415 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124987415
09124 Replication and repair
03420 Nucleotide excision repair
124987415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124987415
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124987415
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124987415
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124987415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-C3HC4
zf-RING_UBOX
TRAF3_RING
zf-C3HC4_2
DZR_2
zf-UDP
zf-RING_2
DNA_ligase_ZBD
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
124987415
NCBI-ProteinID:
XP_047412597
LinkDB
All DBs
Position
6:complement(98851837..98852848)
Genome browser
AA seq
308 aa
AA seq
DB search
MDEQGCPWCKTTKYRNPSLKLMVNVCGHTLCESCVGLLFVRGAGNCPECGTPLRKSNFRV
QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
KMELYQKENKDIIQKNKLKLTREQEELEEALEVERQENEQRRXIQKEEQLQQILKRKNKQ
AFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPIKPVTFSTGIKMGQHISLAPVHKL
EEALYEYQPLQIETCGLKVPELEMLGRLGYLSHVRAASPQDLAGGYTSSFACHRALQDAF
SGLFWHPS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacagggctgcccttggtgtaagaccaccaaataccggaacccctccctgaag
ctgatggtgaacgtgtgcggacacactctctgtgaaagttgtgtgggtttactgtttgtg
agaggagctggaaactgtcctgagtgtggcactccacttcggaagagcaacttcagggta
cagctctttgaagatcccactgttgacaaggaggttgagatccggaagaaagtgctaaag
atatacaataaaagggaagaagattttcctagtctaagagaatataatgatttcctagaa
gaagtggaggaaattgttttcaacttgaccaataatgtggatttggacaacaccaaaaag
aaaatggagctataccagaaggagaacaaagatatcattcagaaaaataagttaaaactg
actcgggaacaggaagaactggaggaagctttagaggtagaacggcaggaaaatgaacaa
agaaganctatacaaaaagaagaacaactgcagcagattctaaaaaggaaaaataagcag
gcttttttagatgaactggagagttctgatctccctgtagctctgcttttggctcagcat
aaagatagatccacccaattggaaatgcaacttgagaaaccaaaacctataaaaccagtg
acattttctacaggcatcaaaatgggtcaacatatttcattggcacctgttcacaagctt
gaagaagctctctatgaataccaaccgctgcaaatagagacatgtggactaaaagttccc
gagcttgagatgctgggaagacttgggtatttaagccatgtcagagctgcttctccacag
gaccttgctggaggctatacttcttcttttgcttgtcacagagcactacaggatgcattc
agtggacttttctggcaccccagttaa
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