Sciurus carolinensis (gray squirrel): 124987576
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Entry
124987576 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: retinal-specific phospholipid-transporting ATPase ABCA4-like
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124987576
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124987576
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124987576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_15
AAA_23
AAA_22
SRP54
AAA_29
DUF4106
Motif
Other DBs
NCBI-GeneID:
124987576
NCBI-ProteinID:
XP_047412820
LinkDB
All DBs
Position
1:128610888..128738141
Genome browser
AA seq
2339 aa
AA seq
DB search
MGFARQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSQHECHFPNKA
MPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQGLLLNAPESQ
HFGQVWTELRTLSQFMDTLRTHPERIAGRGVRIRDILKDEETLTPFLIKNIGLSNSVVHL
LVNSQVRVEQFAYGVPDLALKDIACSEALLDRFIIFSQHRGARTVHDALCSLSQGTLQWI
EDTLYANVDFFKLFRVLPTLLDSSSEGINLKSWGKIVSDISPRIQEFIHQPSVQDLLWVT
RPLLQNGGPQTFTQLMSILSDLLCGYPEGGGSRVFSFNWYEDNNYKAFLGIDSTRKDPIY
SYDKRTTSFCNALIQSLESNPLTKIAWRAAKPLLMGKILFTPDSPAAQRILKNANSTFEE
LERLRKLVKAWEEIGPQIWYFFDSSTQMTMIRDTLEHPTVKNFLNRHVGEEGITAEVLLN
FLYNGPPENRAAGMINFDWRDIFNITDRSLHLVNQYLECLVLDKFESYDDEIQLTQRALS
LLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVED
FRYIWGGFAYLQDMVEQGITRSQAQVEVPVGVYLQQMPYPCFVDDSFMIILNRCFPIFMV
LAWIYSVSMTVKGIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTVFIM
HGRILHYSDPFIVFLFLLTFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCF
AWQDRMTAELKKAVSLLSPVAFGFGTEYLVRFEEQGLGLQWNNIGNSPMEGDEYSFLLSM
EMMLLDAAIYGLLAWYLDQVFPGHHGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPL
TEEMEDPDHPGGKNDSFFERELPGLVPGVCVKNLVKVFEPGSRPAVDRLNITFYENQITA
FLGHNGAGKTTTLSILTGLLPPTSGTVLIGGKDIETSLDAIRQSLGMCPQHNILFHHLTV
AEHILFYAQLKGKSWEEAQLGMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA
KVVILDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC
SGTPLFLKNCFGTGFYLTLVRKMKNIQSQRSGCEGTCSCASKGFSVRCPTSVDEITPEQV
LDGDVNELMDVVCHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLS
SFGISDTPLEEIFLKVTEDSDSGPLFAGTVLGYGTRREHASMLHPCLSPSEKAQQPAQSS
NTCSPTQAAHPEGQPPPEPQRTGMVLNTGLRLVLQHVQALLIKRFHHAVRSRKDFLAQMV
LPATFVFLALVLSIIVPPFGEYPALTLHPWIYGQQYTFFSMDEPGSKHLEVLADVLLNKP
GFGNRCLKEEWLLEYPCGNSTPWKTPPVSPNITHLFQKQKWTPANPSPSCQCSTREKLTM
LPECPEGAGGLPPPQRIQRSTEILQNLTNRNISDYLVKTYPALIRSSVKSKFWVNEQRYG
GISIGGKLPVVPITGEDLVGFLSELGRIMNVSGGPITREASEEMSDFLKYLETEDNIKVW
FNNKGWHALVSFLNVAHNAILRANLPKDRNPEEHGITVISQPLNLTKEQLSEITVLTTSV
DAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFVSGVSATTYWMTNFLWDIMNYAVS
AGLVVGIFMGFQKKAYTSPRSLPALIALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCA
NLFIGINSSAITFILELFENNQTLLRFNAMLRKLLIIFPHFCLGRGLIDLALSQAVTDVY
ARFGEEHSPNPFQWDLIGKNLVAMAAEGVVYFLLNLLVQQHFFFTRWMAEPTKEPIVDED
DDVAEERQRITSGGNKTDILRLNELTKIYSGSSSPAVDRLCVGVRPGECFGLLGVNGAGK
TTTFKMLTGDTAVTSGDATIAGKSILTNISEVHQNMGYCPQFDAVDDLLTGREHLYLYAR
LRGVPAEEIEKVASWSIQSLGLSLHADRLVGTYSGGNKRKLSTAMALIGCPPLVLLDEPT
TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCLGTIQHLK
YKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSLARI
FQLLLSHKDSLFIEEYSVTQTTLDQVFVNFAKQQTEPHDLPLHPRAAGASQKAKLERNSG
QLDXQEPLPVWSSKRNQFTTAENKHTRRAVDSGGGSFRRKPDIAHLQDLMVKLTPPNIE
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgccagacagatacaacttttactctggaagaactggactctgcggaaaagg
caaaagattcgctttgtggtggaactcgtgtggcctttatctttgtttctggtcttgatc
tggctgaggaacgccaacccgctctacagccagcacgaatgtcattttcccaacaaggcg
atgccctcagcaggaatgttgccatggctccaggggattttctgcaatgtgaacaatcct
tgttttcaaagccccaccccaggagaatctcctggaattgtgtcaaactacaacaactcc
atcttggcaagagtgtatcgagattttcaagggctcctcctaaatgcgccagagagccag
cactttggccaagtttggacagagctccgcaccttgtcccagttcatggacaccctgagg
actcaccctgagagaattgcaggacgaggagtacgcattcgggatatcctgaaagatgaa
gagacactgaccccatttctgattaaaaacattggcctgtccaactcagttgtccatctg
ttggtcaactcccaagtccgtgtggagcagtttgcgtatggagtaccagacctggcgctg
aaggacatcgcctgcagtgaggccctcctggaccgcttcatcatcttcagccagcatcgt
ggagcaaggactgtgcatgatgccctgtgttccctctcccagggcaccctacagtggata
gaagacactctgtatgccaatgtagacttcttcaaactcttccgtgtgcttcccacactc
ctagatagcagttctgaaggcatcaacctgaagtcctggggaaaaatagtatctgatata
tctccaagaattcaagaatttatccatcagccaagtgttcaagacttgctgtgggtgacc
agacctctcctgcagaatggcggtccacagaccttcacacagctgatgagcatcctgtct
gaccttctgtgcggctacccagagggagggggctctcgggtgttctccttcaactggtat
gaagacaataattacaaggccttcctagggatcgattccaccaggaaagatcccatttat
tcttatgacaaaagaacaacctccttttgtaacgcattgatccagagcctggagtcaaac
cctttaaccaaaatagcctggagggcagcaaagcccttgctgatgggaaaaatcctcttt
actcctgattcccctgcagcgcaaaggatactaaagaacgccaactcaacttttgaagaa
ctggagcgtctcaggaagctggtcaaagcctgggaggaaataggaccccagatatggtac
ttctttgacagcagcacacagatgaccatgatcagagacaccctggagcacccaaccgta
aagaactttctgaatagacatgttggtgaagaaggtattactgctgaggtcttgctgaac
ttcctctataatggtcctccagaaaatcgggctgctggcatgatcaactttgactggagg
gatatatttaatatcactgaccgttccctacacctggttaatcaatacctagagtgccta
gtcctggataaatttgaaagctacgatgatgaaattcagctcacccaaagagccctctct
ctgctggaggaaaacaggttctgggctggtgtggtattccctgacatgtatccctggacc
agctccctgccaccccacgtgaagtacaagattcggatggacatagatgtggtggagaaa
accaataagatcaaagacaggtactgggattctggtcccagggcagatccagtggaagat
ttccggtacatctggggaggctttgcctatctgcaggacatggttgagcaggggatcacc
aggagtcaggcccaggtggaagttccagtgggggtctatctccagcagatgccttacccc
tgcttcgtggatgactcttttatgatcatcctgaaccgatgtttccctatcttcatggtg
ctggcatggatctactctgtctccatgacagtaaagggcattgttctggaaaaggagttg
aggctgaaggagaccttgaaaaaccagggtgtctccaatgcagtgatttggtgtacctgg
ttcctggacagcttctccatcatgtcaatgagcatctttctcctgacagtattcattatg
catggaagaatcctacattacagcgatccgttcatcgtcttcctgttcctgttgaccttc
tccactgccacgatcatgcagtgcttcctgctcagcaccttcttctccaaggccagcctg
gcagcagcctgcagcggtgtcatctacttcaccctctacttgccgcatatcctctgcttc
gcctggcaggaccgaatgaccgctgagctgaagaaggctgtgagcctgctgtctcctgtg
gcatttgggtttggcactgagtatctggttcgctttgaagagcaaggcctggggctgcag
tggaacaacattgggaacagtcccatggaaggagatgagtacagtttcctgctgtccatg
gagatgatgctccttgatgctgctatatatggcttgctggcctggtaccttgaccaggtg
tttccagggcatcatggaaccccacttccttggtacttcctactacaggagtcttattgg
cttggtggtgaagggtgttcaaccagagaagagagggccctggaaaagactgaacccctg
acagaggaaatggaggatccagaccacccaggaggaaagaatgactccttctttgagcgt
gagcttccaggactggttcctggggtgtgtgtgaagaatctggtaaaggtctttgagcct
ggtagccggccagctgtggaccgactgaacattaccttctatgagaaccagatcactgcc
ttcctaggtcacaatggagcagggaaaaccaccaccttgtccatcctgacaggcctgttg
ccgccgacatcagggactgtgctcattggaggaaaggacattgaaaccagcctggatgcc
atccggcagagccttggcatgtgtccacagcacaacatcctgttccaccacctcacagtg
gctgagcacatcctgttctatgcccagctgaaaggcaagtcctgggaggaggcccagctg
gggatggaagccatgttagaggacacaggcctccaccacaagaggaacgaagaagcacag
gatctttcaggtggcatgcagaggaaactgtctgttgcaattgccttcgtgggagatgcc
aaggtggtcatcctggatgagcccacctctggggtggacccctactccagacgctccatc
tgggacctgctcctgaagtatcgctcaggcagaaccatcatcatgtccactcaccacatg
gacgaggcagacctccttggcgaccgcatcgccatcatctcccagggaaggctttactgc
tcaggcacacctctcttcctgaagaactgcttcggcacaggcttctacttgaccttagtt
cgcaagatgaaaaacatccagagccaaagaagtggctgtgagggcacctgcagctgcgca
tctaagggtttctctgtcagatgtccaaccagcgttgatgagataactccagaacaagtc
ttggatggggatgtgaacgagttgatggatgtggtttgccaccatgttccagaggcaaag
ctggtggaatgcattggtcaagaactcatcttcctacttccaaataagaatttcaagcag
agagcatatgccagccttttcagggaattggaggagacactggccgacctggggctcagc
agttttggcatttctgacactcccctggaagagatttttctgaaggttacagaagattct
gattcaggacctctgtttgctggtacggtattggggtatggcacgagaagggaacatgcc
agcatgctacacccctgcttgagccctagtgagaaggcccagcagcctgcccagagctcc
aacacctgctcccccacgcaggccgctcaccctgagggccagcctcccccggagccacag
cgcactggcatggtgctcaacactggcctgcgactggtcctgcagcatgtgcaggcactg
ctgatcaagcggttccaccacgctgtccgcagtcgcaaggacttcctggcccagatggtg
cttccagccacttttgtgttcttggctctggtgctttccatcattgtgcctccttttggt
gaataccctgccttgaccctacacccctggatatatgggcagcagtacaccttcttcagc
atggacgagccaggcagcaagcaccttgaggtactggcagacgtcctcctgaacaagcca
ggtttcggcaaccgctgcctgaaggaagagtggcttctggagtacccctgtggcaattca
accccctggaagactcccccagtgtcgccgaacatcacccatctgttccagaagcaaaaa
tggacaccagccaacccctcaccctcctgccagtgcagcaccagagagaagctcaccatg
ctacccgagtgccctgagggcgccggggggctcccgcccccacagagaatccagcgcagc
actgaaatcctacaaaaccttacgaacaggaacatttcggactacttggtaaaaacatat
ccggctcttataagaagcagtgtaaaaagcaaattctgggtcaacgaacagagatacggg
ggaatttccattggaggaaagcttccagtggtccccatcactggggaagatcttgttggt
tttttaagtgaacttggccggataatgaacgtgagcgggggccccatcaccagagaagca
tctgaagaaatgtctgatttccttaaatatcttgaaactgaagacaacattaaggtgtgg
tttaacaacaaaggctggcacgccctggttagctttttgaatgtagcccacaacgccatc
ttgcgggccaacctgccaaaggacaggaaccccgaggagcacggaatcaccgtcatcagc
cagccactgaacctgacaaaggagcagctctctgagatcacagtgctgaccacatcagtg
gatgctgtggttgccatctgtgtgatttttgccatgtcctttgtcccggccagctttgtc
ctttacttgatccaggagagggtgaataaagccaagcacctccagtttgtaagtggagtg
agcgccaccacctactggatgaccaacttcctctgggacattatgaattatgcggtgagt
gcaggactggtggtgggcatcttcatggggtttcagaagaaagcctacacgtcccccagg
agtcttcctgccctgattgcactgctcatgctgtatggatgggcagtcattcccatgatg
tacccagcatctttcctgtttgacgtccccagcacagcctatgtggctttgtcttgtgct
aatctattcattggcatcaacagcagtgccatcaccttcatcctggagttatttgagaat
aaccagactctactcaggttcaacgccatgctgaggaagctgctcattatcttcccccac
ttctgcctgggccggggcctcattgatctggctctgagtcaggctgtgacagacgtctat
gcccggtttggtgaggagcactccccaaatccattccagtgggacctgattgggaagaac
ctggttgccatggcagcagaaggggtggtgtacttcctcttgaatctccttgtccagcaa
cacttcttcttcacccgatggatggctgagcccactaaggagcccattgttgatgaagat
gatgatgtggctgaagagagacaaagaattactagtggtggaaataaaactgatatttta
agactgaatgaactaaccaagatttattcaggttcctccagcccagcagtggacaggctg
tgtgttggagtccgccctggcgagtgctttggcctcctgggagtgaatggtgcaggcaaa
acaaccacattcaagatgctcacaggggacacggcagtgacctcaggtgatgccactata
gcaggcaagagtattttaaccaatatttctgaagtccatcaaaatatgggctactgtcct
cagtttgatgcagtcgatgacctgctcacaggccgagaacatctttacctttatgcccgg
cttcgaggtgtaccagcagaagaaattgagaaggttgcaagctggagcatccagagcctg
ggtctgtccctccacgctgatcgcttggtgggcacatacagtggaggcaataagcggaag
ctctccacggccatggcgctcatcggctgcccgccgctggtgctgctggatgaacccacc
acggggatggacccccaggcacgccgcatgctgtggaacaccatcgtgagcatcatcaga
gaagggagagctgtggtcctcacctctcacagcatggaggaatgtgaggcactgtgtacc
cggctggccatcatggtgaagggtgcctttcgctgtctgggcaccattcagcacctcaag
tacaagtttggagatggctacatcgtcacaatgaaaatcaaatccccaaaggatgacttg
cttcctgacctgaatcccgtggagcagttcttccaggggaacttccctggcagtgtgcag
agggagaggcattacaacatgctccagttccaggtctcttcctcctccctggccaggatc
ttccagctgctcctctcccacaaggacagcctgttcatcgaggagtactcagtcacacag
actacgctggaccaggtgtttgtaaattttgctaaacagcagactgaacctcatgacctc
cctttgcatccccgagctgctggagccagccaaaaagccaagctggaaaggaactctggg
cagctggacntgcaggagcctttgcctgtgtggtcatccaaaagaaaccaattcactaca
gcagaaaacaaacacacaaggagagcagtggactcgggaggaggctctttcagaaggaaa
ccagacatagctcacctgcaagacctgatggtgaaactgaccccaccaaacatagaataa
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integrated database retrieval system
