Sciurus carolinensis (gray squirrel): 124987640
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Entry
124987640 CDS
T08117
Name
(RefSeq) protocadherin beta-5-like
KO
K16494
protocadherin beta
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124987640
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124987640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_FAT4_N
Motif
Other DBs
NCBI-GeneID:
124987640
NCBI-ProteinID:
XP_047412902
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All DBs
Position
6:99556144..99559824
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AA seq
790 aa
AA seq
DB search
METAQAKPPQIRQVIFLAMLLFLWEADSEAIRYSVPEETESGYSVANLAKDLGLRVGELA
TRGARIHHKGSKQLLQLDVKTGDLLLQEKLDREVLCGAIEPCILHFQLLLEHPVQLFQVD
VQLTDVNDHSPEFLDREMFLKIPESAQAGTVFPLKSAQDLDIGSNSVQNYTISPNSNFRV
VIHNRGDGRKYPELVLGKALDREEHPELILTLTALDGGVPPRSGTVTVRIEVVDMNDNAP
EFLQSLFEVHVRENSPINSLVLIVSARDLDAGASGSVAYSLLEGHEVSQPFVIDEKTGEI
RLQRALDYEVNQHYIIEIAATDGGGLVGKCTVAIEVVDVNDNAPELIMSTLTSSIPENSP
ETVVAIFSVSDPDSGDNGRMVCSIQNDLPFLLKPTFKNFYTLVTEGPLDRESRAQYNITI
TVTDLGTPRLETEHSITVLVSDVNDNAPAFSQTFYTLSVRENNSPALHIGSVSATDRDSG
SNAQLTYSLLPPQDPHLPLASLVSINADNGQLFALRALDFEALQAFEFRVGATDHGSPAL
SSQTLVRVVVLDDNDNSPFVLYPLQNASAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW
LSFQLLKATEPGLFGVWAHNGEVRTARLLSERDAARHRLVVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPLPEVAPERAQADSLTVYLVIALASVSSLFLFSVLVFVAVRLCRRHRAAP
LGVCSVPEGHFPSHLVDVSGTGTLYEVCLAGNSGSGEFKFLKPTFPNLLVQDTGTEIKEK
SNCRNSFIFS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggagactgcacaagcaaaacctccgcagataaggcaagttatttttcttgctatgcta
ttgtttttgtgggaggctgactctgaggcaattaggtattctgtgccagaagaaacagaa
agtggctactctgtggccaacctggcaaaagatctggggctcagggtgggggaactggct
actcggggagcgcgaatccatcacaaaggcagcaaacagctcttgcagctcgatgtaaag
accggcgatttgcttctacaggaaaaactagaccgggaggtgctgtgtggggcgatagaa
ccctgtatattgcatttccaactgttactagaacacccggtgcagttatttcaagttgat
gtgcaactcacagatgtaaatgaccattctccagaattcctagacagggaaatgttcctt
aaaatcccagagagtgcccaggcagggacagtgtttcctttgaaatcagctcaggacttg
gacataggtagcaacagtgttcagaactacacaatcagccctaactccaattttcgtgtt
gttattcacaatcgcggagatggcagaaaatacccagagctggtgttgggcaaagctctg
gacagagaagaacaccctgagctcattttaaccctcacagcgctggatggtggggtgcca
cccaggtctgggaccgtcacagtacgcattgaagtggtagacatgaatgataacgcaccc
gaatttttacagtccctgtttgaagtacatgttcgtgagaacagtcccataaactcctta
gttctcattgtctctgctcgagatttagatgcaggagcatctgggagtgtagcctactct
ttacttgaaggtcatgaagtttctcaaccgtttgtaatagatgaaaaaacaggagaaatt
cgtctgcaaagggcattggattatgaggtaaatcaacattatatcatagaaattgcagcc
actgatggaggaggccttgtgggaaaatgcacagtggccatagaagtggtggatgtgaat
gacaatgctcctgaactaatcatgtcgacactcaccagctctattccggaaaactcccct
gagactgtagttgccattttcagcgtttctgatccagactccggggacaatggtaggatg
gtttgctccatacaaaacgatctccccttcctcttgaagcccacatttaagaacttttac
accttggtgacagagggccccctggacagagagagcagagcccagtacaacatcaccatc
acagtcaccgacttggggacacccaggctggaaaccgagcacagcataaccgtcctggtc
tccgacgtcaacgacaacgcccctgccttctcgcagacgttctacacgctgtcggtgcgc
gagaacaacagccccgccctgcacataggcagcgtcagcgccacagacagagactcaggc
agcaacgcccagctgacctactcgctgctgccgccccaggacccgcacctgcccctcgcc
tcgctggtctccatcaacgcggacaacgggcagctgttcgcgctgagggcgctggacttc
gaggccctgcaggcgttcgagttccgcgtgggcgccacagaccacggctcgcccgcgctg
agcagccagacgctggtgcgcgtcgtggtgctggacgacaacgacaactcgcccttcgtg
ctctacccgctgcagaatgcctctgcgccctgcaccgagctggtgcccagggcggcagag
ccgggctacctggtcaccaaggtggtggcggtggacggagactcgggccagaacgcctgg
ctgtcgttccagctgctcaaggccacggagcccgggctgtttggcgtgtgggcgcacaat
ggcgaggtgcgcaccgccaggctgctgagcgagcgcgacgcggccaggcacaggctggtg
gtgctggtcaaggacaatggcgagccgccgctgtctgccagcgtcacgctgcacgtgctg
ctggtggatggcttctcgcagccttacctgccgctgccggaagtggcgcccgagcgcgcg
caggccgactcgctgaccgtctacttggtcatcgccctggcctcggtgtcgtcgctcttc
ctcttttcggtgctggtgtttgtggcggtgaggctgtgcaggcggcacagggcggcgcca
ctgggtgtgtgctctgtgcctgagggccactttcctagccacctggtagatgtcagtggc
actgggaccctgtatgaggtgtgtttggctggcaactctgggtctggtgagttcaagttc
ctgaaaccgacattccccaacctcttggttcaggacactgggacagaaattaaggaaaaa
tccaactgcagaaatagctttatattcagctaa
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