Sciurus carolinensis (gray squirrel): 124988113
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Entry
124988113 CDS
T08117
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124988113
09122 Translation
03013 Nucleocytoplasmic transport
124988113
03015 mRNA surveillance pathway
124988113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124988113
03041 Spliceosome [BR:
ncar03041
]
124988113
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124988113
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124988113
Spliceosome [BR:
ncar03041
]
Complex C
Other components
EJC/TREX
124988113
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124988113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
124988113
NCBI-ProteinID:
XP_047413253
LinkDB
All DBs
Position
7:122946803..122958415
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLDQLDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagatgatgaggtggaaacc
gctgctgggggagatggggctgaggctcctgccaagaaggatgtcaagggctcctatgtt
tccatccatagctctggctttcgtgacttcctgctcaagccagagttgctccgggctatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagctggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactagggagttggcttttcagatcagcaaggaatatgagcgcttttctaaatacatg
cccaatgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
agaaataagagcctcaacctcaaacatattaaacactttatcttggatgaatgtgataag
atgcttgaccagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgggcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaaactctttgac
cttttggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
atcgccctggcccagctcctagtggaacagaatttcccagccattgccatccaccgtggg
atgcctcaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctgtttggccgaggcatggacattgagcgggtgaatattgccttt
aactatgacatgcctgaggattctgacacctacctgcaccgggtggccagagcaggccgc
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgacgccaagattctt
aatgatgtgcaggatcgctttgaggtcaacatcagtgagctgcctgatgagatagacatc
tcctcttacattgaacagacgcggtag
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