Sciurus carolinensis (gray squirrel): 124988157
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Entry
124988157 CDS
T08117
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124988157
03041 Spliceosome [BR:
ncar03041
]
124988157
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124988157
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124988157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
124988157
NCBI-ProteinID:
XP_047413354
LinkDB
All DBs
Position
7:complement(12169394..12370057)
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AA seq
1293 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVPFNKKLMDRFDFGEDSEHSEEP
KKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLDGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGPVASSLAASALPAGNVFNP
PSKQAEPEEKVPHLLEHQIPSGENSRPVIPNDISSTAAILGAQPPNVTSNSGILGVQRPN
VSSNSEILGVRPSNVSSNSGIIGAQPPNILNNSGILGIQPPNVSSSSGLLGVLPPNMPNN
SGLVGVQPPNVTNTSGLLGTQPPAGPQSLPPLNIPNQRMPAMPILDIRPGLIPQAPGPRF
PLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLAPGRQSVENVINPEK
RIPLGSDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFTPEKPWGHRGDFDEREHRVLPVYGGPKGLHEE
RGRFRAGSYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLG
RDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEK
LTSSSDINKEKSDTVADIESEPVVVESTETEGT
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaaaccttcaacagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccttgaatgactacaaacca
cccatttctaaagcaaaaatgacccagattacaaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaaa
gtacctggactttatgttattgactctattgtgagacaatcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacctcgatttagtaataacatcattagcactttccagaatttg
tatcgttgccctggggatgacaagagtaaaatagtgagagtcttaaacttatggcagaag
aataatgtatttaagagtgagattattcaaccgcttttggatatggcagcagggattcct
cctcccgtcgtcacacctgttttggccagtactactgccgctatgagcaatactccagga
acacctgtgacacctgttactccagccaatgtggtccaaggcctgcctgatccatgggta
tctcagataacaaatacggatacacttgcagcagttgctcaaatcttacaaagtcctcaa
ggccaacagcttcagcagttaatacaaaccttacagatacaacagcagaagccgcagcct
tccatcctccaggccctggatgctggtcttgtggtccagttgcaggctctcacagcacag
cttacagctgcagccgcagcagccaacacacttactcccttggagcagggagtccctttc
aacaagaagttgatggatagatttgattttggggaagattctgagcatagtgaagaaccc
aaaaaggaaatgccaacgcctcaactttctcatgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacaacagcaaaaccttgaacatctcagacagcagctc
ttggaacagcaacagcctcaaaaggcaactcctcaggatagtcaagaaggtacatttgga
tcagagcattcagcctcaccatcacaaggaagtagtcagcaacattttcttgagcctgaa
gcaaatttggatgattctatagatattcagcaacaggatatggatatagatgaagggcaa
gatggagtggaagaggaaatcttcgaacaagaagctaagaaagtggctgttcgctccaga
tcaagaactcattcgcgatctcgttcaagatcaccaaggaaacggaggtccaggtcacga
tctggatctcgaaaacgtaaacacagaaagcgttccaggtcccgctcaagagagaggaag
aggaagtcatcacgttcatactccagtgaaaggagagccagagaaagggagaaggaacgg
cagaaaaagggattacctccaattagatctaaaacattaagtgtatgtagtactactctg
tgggttggtcaggtagacaagaaggcgacacagcaagatttaaccaatctttttgaagag
tttggacaaattgaatccattaatatgattcctcccaggggttgtgcttatgtctgtatg
gtacatcgacaagatgcatttcgagctcttcagaaactgagttccggatcatataaaatc
ggttccaaggttattaagattgcttgggctttaaacaaaggtgtaaaaacagaatacaaa
caattctgggatgtggatcttggagttacatatataccatgggaaaaagttaaagtggat
gacttggatggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgaatgg
gaaacggtgaaaagctcagaacctgttaaagagacggtccagacaacgcagagtccaact
ccagttgaaaaggagacagtggtcacaacccaggcagaggttttccctccacctgttgcc
atgttgcagattccagtagcaccagcggtgcctacagttagtttagttccaccagcattt
cctgtgtctatgccagttcctcctcctggattcagtccgatccctccaccaccttttctt
cgagcaagttttaacccttcacagccacctcctggtttcatgccccctccagttcccccg
ccggttgtaccaccccctacaattccaccagtagtaccaacatccttagtgcagccgcca
ctgtccatgaccccagaaactgtgaaggatgttggatttggtagtcttgttttaccaggt
ggtccagttgccagcagtcttgctgcttctgctctgccagctggaaatgtttttaatcct
ccaagtaaacaagcagagcctgaagaaaaagtacctcatcttttagaacaccagattcct
tctggtgaaaacagcagaccagtgattccaaatgacatttcaagtacagctgcaatttta
ggagcacagccgcctaatgtgacaagcaattctggaattttgggagtccaaagaccaaat
gtatcaagtaattctgaaattcttggagtccggccatctaatgtttccagtaattctggg
attattggagcccaaccaccaaatattttaaataactctggaattttgggaatacagcca
ccgaatgtgtcaagtagttctggacttttgggagtgctacccccaaatatgccgaataat
tctggacttgtaggagtacagccaccaaatgttacaaatacttctggacttttgggaaca
cagccaccagctggacctcaaagtttaccccctttaaatatccctaatcaaaggatgcct
gcaatgccaatattagacattcgtccaggactgataccacaggcacctggaccaagattc
cctttaatacaacctggaattccaccccagcgtggaatccctcccccatcggtacttgat
tcagctcttcacccaccaccccgtggaccttttcctccaggagatattttcagtcagcca
gaaagaccttttctagctcctggaagacaaagtgtggaaaatgttattaacccagaaaaa
aggataccacttgggagtgataacattcaacaggaaggagatagagattaccggtttcct
cccatagaaaccagggagagcattagtagacctcccccagtggatgttagggatgtggtg
gggcggcctatagatccaagagaaggtcctggaaggcctccattagatggtagggatcat
tttggaagacctcctgtagatataagagagaatcttgtgaggccaggtatagatcatctt
ggtcgaagagaccactttggctttaccccagagaagccctgggggcatagaggagatttt
gatgagagagagcaccgggttctccctgtctatggtggtccaaaaggattacatgaagaa
agaggtagatttcgggctggaagctaccgatttgatcctagaagtggtccttggaacaga
ggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagagacag
agggatagggatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttgga
cgagacagaattcaaaacacttgggtcccccctcctcatgctcgggtttttgattatttt
gaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaataca
gagagacatgctcaaccaccgcctttaccagtacagaatgatcctgaactttatgaaaaa
ctgacgtcttcaagtgacataaacaaggagaagagtgacacagttgctgatatagaaagt
gaaccagtggtggtagaaagcacagaaactgaggggacataa
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