Sciurus carolinensis (gray squirrel): 124988179
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Entry
124988179 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23-like
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124988179
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
124988179
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
124988179
NCBI-ProteinID:
XP_047413395
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All DBs
Position
7:33233310..33279025
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AA seq
1377 aa
AA seq
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MVQMEAQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHE
QCIQWIVKXIHGQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWAL
TFKLVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACL
LPAYFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAI
CNSWKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIA
QHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLISLCFSKFASFPH
MVLSLHQKLAGRGLIXGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPV
PDINKPQSTHAFAMTCXWIHLNRKXQNGNSNLQIPIPHSLKLHHEFLQQSLRNKSLQMND
YKIALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTSCLASASITPLPMNLLDSL
TVHAKMSLIHSIATRVIKLAHAKTSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPT
VFKSNAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTDQNQLHLCVESTALR
LITALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTW
CKDILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMT
NENEIITHFSIQGSPPLFLCLLWKMLLDTDHINQIGYRVLERIGARALVAHVRTFADFLV
YEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLL
KPNDFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPY
LPIYFGNVCLRFLPVFDIVIHRFLELYPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHY
YEMYLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKYAMNPREDNPWVPDDSYYCKL
IGRLVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKDVGNALLNVVL
KSQPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSRSLTSETEWVGYPFRLF
DFTACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHL
VGPFLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVK
EQVEKIICNLKPALKLRLRFITHISKMEPAAVPPQAINSGSPAPQSNQVPASLPVTQ
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggtacagatggaggcacaactgcagagcattttcgaggaggtggtgaaaacggaagtt
atagaagaggctttccccgggatgtttatggatacccctgaagatgaaaaaacaaaactt
attagctgtttgggggccttcagacagttttggggtggtctttctcaggagtctcatgaa
cagtgcatccagtggattgttaaanttatccatggccagcatagtcctaaaagaatttct
tttctttatgactgcttagcaatggcagttgaaactggtctccttccacccaggatggtt
tgtgaatctctcataaactctgacactcttgaatgggaaagaacacagctctgggcctta
acatttaaactggttcggaaaatcattgggggagtggattacaagggtgttcgagatctc
ttaaaggtgattttggagaaaatcttgacaattcctaatacagtgagttctgctgttgta
caacagctgttagcagcacgagaggttatagcatatatcttggaaagaaatgcctgctta
ttaccagcctattttgcagtcacagagatcaggaaactatatcctgagggaaaacttcca
cactggttacttggaaacctagtatcagactttgtagataccttcaggcccacggcaagg
ataaactccatatgtggccgctgcagtcttctaccagttgtaaataactcaggtgccatt
tgtaattcatggaaattggatcctgcaactcttcgttttcctttgaaaggccttttgcca
tatgataaggatctgtttgaaccccagactgctttgttgagatatgtattggagcagcct
tattccagggatatggtctgcaatatgctaggtttaaataagcagaccttgaacattgct
cagcacaagcagcgctgccctgtgctggaggaccagttggtggatctggtggtgtatgcc
atggagcggtccgagaccgaggagaagtttgatgatgggggaacaagccaactgttgtgg
cagcatctctcaagtcagctcatttctttgtgcttttccaagtttgccagttttccacat
atggtcctttctcttcatcagaagttagcagggcgaggactaatcnaaggcagagatcat
ttgatgtgggttctcctgcaattcatttctggaagtattcagaaaaatgcgctagctgat
tttctccctgtcatgaagctctttgatctgctctacccagaaaaagaatgtatcccagtt
cctgatattaataaaccccagtcaactcatgcctttgcaatgacttgtnattggattcat
ctcaatagaaagncccaaaatggcaactccaatctacaaattccaatacctcattcccta
aagcttcaccatgagttcttacagcagagtctgagaaataaaagtttacagatgaatgac
tataagattgccctgttgtgtaatgcatactctacaaattcagaatgttttacgttaccc
atgggagccctggtagaaactatttatggaaatggaattatgaggatacctctcccagga
acaagctgtttggcttctgcatctataactcccttaccaatgaacctcctggattcattg
acagttcatgccaaaatgagccttattcacagcattgcaaccagggtgataaaacttgct
catgcaaagaccagtgtggcattggctccagccctagtggaaacttacagtcgtttattg
gtctatatggaaatagagtcattgggcatcaaaggatttatcagtcagctcttaccaact
gttttcaagtctaatgcttgggggatcttgcacacactccttgagatgttcagctaccgg
atgcaccacattcagcctcattacagagtgcagctcctgagtcatcttcatactttggct
gcagttgcacaaacagaccagaaccagctccatctttgcgttgagagcactgcactcagg
cttataacagcattaggtagctcagaggtacagccgcagtttacacgtttccttagtgat
cccaaaacagtgctgtctgcggaatctgaagaactgaaccgagccttgatactgacctta
gccagagcaactcatgtaacagatttttttacaggctctgattcaattcaaggaacttgg
tgtaaagacatacttcagactatcatgagttttactcctcataattgggcttcacatacc
cttagctgttttccaggcccactacaggcattcttcaaacaaaataatgtacctcaggaa
agtcgttttaatctgaaaaaaaatgttgaagaggagtataggaagtggaagtctatgacc
aatgaaaatgaaatcattacccacttttccatacaaggctctcctcctcttttcctttgt
cttctctggaaaatgctcttggacacagatcatattaatcagattggctacagagtctta
gagagaattggagccagggccttggtagcccatgtgagaacatttgcagatttcctggta
tatgagttctctacatcagcaggaggtcagcagcttaataagtgcattgaaattcttaat
gacatggtatggaaatacaacattgttacattggacagattaattctctgcctggccatg
cgtagtcatgaaggaaatgaagcccaggtttgttacttcataattcagttgctgttactc
aaaccaaatgactttagaaatcgagtaagtgactttgtgaaggaaaattccccagaacac
tggctgcagaatgactggcataccaagcacatgaattatcacaagaaatatccagaaaag
ctctattttgagggcctggcggaacaagtcgatcctcctgtgcagattcaatccccctat
ctgccaatctattttggaaatgtgtgtctccgattccttccagtattcgatatagtaatt
cacagatttttagagttatacccagtatccaaatcactggaaactctactggatcactta
ggaggcttatataaatttcatgatcggccagtgacttacctgtataatactttgcactat
tatgaaatgtacttgagaaaccgcgaccatctcaaacgaaaacttgtccatgcaatcatt
ggctcacttaaggataatcgaccacagggctggtgtctaagtgacacttacctgaagtat
gctatgaatccacgagaggacaacccttgggtcccagatgattcctactattgcaaacta
attggcagactagtagatacgatggctggcaaatctcctggtcccttcccaaactgtgac
tggcggtttaatgagtttcccaaccctgccgcccatgctctgcatgttacttgtgtggag
ctcatggccttggcagtttcaggcaaagatgttggaaatgcccttctaaatgtcgtactg
aaaagtcagcccttggtaccaagagagaacattacagcttggatgaatgcaattggtttg
atcatcactgccctaccagaaccatattggattgtccttcatgatcgaattgtgagtgtt
atcagcagtcgcagcttgacgtcagaaacagagtgggttggttatccattccgtctgttt
gacttcactgcttgtcatcagtcctactctgagatgagctgtagctacacattagctcta
gcacatgctgtgtggcaccattctagcattgggcagctttctctcattccaaagtttctc
actgaagtactgcttcctatagtgaagactgaattccagttgctttatgtataccatctt
gtaggaccatttttacaaagatttcagcaggagagaactcgatgtatgatagagatcggt
gtggcattttatgacatgctgctgaatgtagaccagtgtagcacccatttaaattacatg
gatcccatctgtgacttcctgtatcatatgaaatacatgtttactggtgacagtgtgaaa
gaacaagtagagaagattatctgtaatttaaaaccagctttaaaacttcgtcttcgattc
atcacacacattagcaagatggaaccagctgcagtgcctccacaagccataaatagtgga
tctccggcacctcagtctaatcaggtgccagcatccttaccagtaactcagtga
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