KEGG   Sciurus carolinensis (gray squirrel): 124988259
Entry
124988259         CDS       T08117                                 
Name
(RefSeq) PH-interacting protein isoform X1
  KO
K11797  PH-interacting protein
Organism
ncar  Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ncar04121]
    124988259
Ubiquitin system [BR:ncar04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124988259
SSDB
Motif
Pfam: WD40 WD40_Prp19 Bromodomain WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_SPT8 NBCH_WD40 Beta-prop_RIG_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_DCAF12 WbmS-like
Other DBs
NCBI-GeneID: 124988259
NCBI-ProteinID: XP_047413532
LinkDB
Position
7:82069792..82192562
AA seq 1823 aa
MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTY
QNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVW
KGSALAALHCGRPPESPINYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRIL
GHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI
AAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLW
DAGTLKINPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISE
LEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMATRPAGQNLQGIED
KITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPR
VLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLI
FGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPS
RYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDSMIQRLQQEQDLRRSG
EAGIGNTSRLSRGSVSSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWS
RRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHLTVAKENKILTVSKNHAHEHF
LDLGESKKQQANQHNYRTRSALEETPRPLEEIENGTSSSDEGEVVAVSGGTSEEEERAWH
SDGSSSDYSSDYSDWTADAGINLQPPKKVPKHKTKKAESSSDDEEESEKQKQKHIKKEKK
KVNEEKDGPTSPKKKKPKERKQKRLAVGELTENGLTLEEWLPSTWITDTIPRRCPFVPQM
GDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCC
LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAW
WFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDMELIPNNAVFPEELGTSVPLT
DVECRSLIYKPLDGEWGTNPRDEECERIVAGINQLMTLDIASAFVAPVDLQAYPMYCTVV
AYPTDLSTIKQRLENRFYRRVSSLMWEIRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFV
KDQTCYNIIPLYNSMKKKVLSDSEEEEKDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQA
WKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPME
LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKR
RKKRNRSSSISSSAASSPERKKRIVKPQLKSEISTSPFSTPTRSVPPRHNAAQINGKTES
SSVVRTRSNRVITDPVINTEQPSTSSAAKNFIPKANTSAVPGKTILENSVKHSKALNTLS
SPGQSTFSPGTRNNTAKENMEKEKPVKRKMKSSVLSKASTLSKSSPVIEQGDCKNNAFVP
GTIQVNGHGGQPSKLVKRGPGRKPKVEVNTSSGEIIHKKRGRKPKKLQYTKTENAEQNNM
HPIRDEVVPSSTCNFLSETNMVKEDLLQKKSRGGRKPKRKMKTQKLDSDLIVPANVKVLR
RSNRKKTDDPIIDEEEEFEELKSSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLT
FGTSSRGRVRKLTEKAKANLIGW
NT seq 5472 nt   +upstreamnt  +downstreamnt
atgtcttgtgagaggaaaggcctctcggagctgcgatcggagctctacttcctcatcgcc
cggttcctggaagatggaccctgtcagcaggcggctcaggtgctgatccgcgaggtggcc
gaaaaggagctgctgccccggcgcaccgactggaccgggaaggagcatcccaggacctac
cagaatctggtgaagtattatagacatctagcacctgatcacttgctgcagatatgtcat
cgactaggaccacttcttgaacaagaaattcctcaaagtgttcctggagtacaaacttta
ttaggagctggaagacagtccttgctacgtacaaataaaagctgcaagcatgttgtgtgg
aaaggatctgctctggctgcactgcattgtggaagaccacctgagtcaccaattaactat
ggtagcccacccagcattgcggatactctgttttcaaggaagctgaatgggaaatataga
ctcgagcgacttgttccaactgcagtgtatcagcacatgaagatgcataaacgaattctt
ggacacttgtcatctgtatactgtgtaacttttgaccgtaccggcagacgtatattcact
ggttctgatgattgccttgtgaaaatctgggcaacagatgatgggagattattagctact
ttaagaggacatgctgctgaaatatcagacatggctgtaaactatgagaataccatgata
gcagctggaagttgtgataaaatgatccgagtctggtgtcttcgaacctgtgcacctttg
gcagttcttcagggtcacagtgcatctattacatcactacagttctcaccattgtgcagt
ggttcaaagagatatctatcatctactggggcagatggcactatttgtttttggctctgg
gatgctggaacccttaaaataaatccgagacctgcaaaatttacagagcgccctcgacct
ggagttcaaatgatctgttcttcttttagtgctggtggaatgtttctggccacagggagc
acagatcatattattagagtttatttttttggatcaggtcagccagagaaaatatcagaa
ttggagtttcatactgacaaagttgacagtatccagttttccaacactagtaacaggttt
gtaagtggtagtcgtgatgggacagcacgtatttggcagttcaaacgaagagaatggaag
agcattttgttggatatggctactcgtccagcaggccaaaatcttcaaggaatagaagat
aaaatcacaaaaatgaaagtaactatggttgcttgggatcgacatgacaatacagttata
actgcagttaataatatgactctgaaagtctggaattcttacactggtcaacttatccat
gtcctgatgggtcatgaagatgaggtatttgttcttgagccacatccatttgatcctaga
gttctcttttctgctggtcatgacggaaatgtgatagtgtgggatctagcaagaggagtc
aaaattcgatcttatttcaatatgattgaaggccaaggacatggtgcagtatttgactgc
aaatgctctcctgatggtcagcattttgcatgcacagactctcatggacatcttttaatt
tttggctttgggtccagtagcaaatatgacaagatagcagatcagatgttctttcatagt
gattatcggcctcttatccgtgatgccaacaattttgtattggatgaacagactcagcag
gcacctcatcttatgcctcccccctttttggttgatgttgatggtaaccctcatccatca
agatatcagagattagttcctggtcgtgaaaactgcagagaggagcaactcatcccacag
atgggagtaacatcctcaggattgaaccaagttttaagtcagcaagcaaaccaggaaatc
agtcctttggacagcatgattcaaagactacaacaagaacaagaccttagacgttctggt
gaagcaggtattggtaataccagccgcttgagtagaggctctgtaagttctacctcagag
gttcattcaccaccaaatgtaggactaagacgtagtggacaaattgaaggtgtgcggcaa
atgcatagcaatgcaccaaggagtgaaatagccacagagcgggatcttgtagcatggagt
cgaagggtcgtagtacctgagctatcagctggtgtagccagtcggcaggaagagtggcga
actgcaaagggagaagaagaaataaagacttacagatcagaagagaaaaggaaacactta
actgttgcaaaagagaataaaatacttactgtctcaaagaatcatgctcatgagcatttc
ctggatcttggggaatccaaaaagcaacaagcaaatcaacacaattatcgtacaagatct
gcactggaagagactcctagaccattggaggagatagaaaatggcactagttcttcagat
gaaggtgaagtggttgctgtcagtggtggaacatctgaagaagaagagagagcttggcac
agtgatggcagttctagtgactactcaagtgattactctgactggacagcagatgcagga
attaatttgcaaccaccaaagaaagttcccaagcataaaaccaagaaagcagaaagcagt
tcagatgatgaggaagaatctgaaaaacagaagcaaaaacatattaaaaaagaaaagaaa
aaagtaaatgaagaaaaagatggaccaacatcaccaaagaaaaagaaacccaaagaaaga
aaacaaaagagattggctgtgggagaactaactgaaaatggtttgacattagaagaatgg
ctaccatcaacgtggattacagatactattccccgtagatgtccatttgtgccacagatg
ggtgatgaggtttattatttccgacaaggacatgaagcatatgttgaaatggcccggaaa
aataaaatttatagtatcaatccaaaaaaacagccatggcataaaatggaactacgggaa
caagaactgatgaaaatagttggcataaagtatgaagtgggattacctacactttgctgc
cttaaacttgcttttctagatcctgacactggtaaactgactggtggatcatttaccatg
aagtaccacgatatgcctgatgttatagatttcctagtcttgagacaacaatttgatgat
gcaaagtataggcggtggaatataggtgaccgtttcagatcagtcatagatgacgcctgg
tggtttggaacaattgaaagtcaggaacctcttcagcctgaataccctgatagtttgttt
cagtgctataatgtttgctgggacaatggagatacagaaaagatgagtccttgggatatg
gagcttatacctaataatgctgtatttccggaagaactaggtaccagtgttcccttaact
gatgttgaatgcagatcattaatctataaacctcttgatggagagtggggtaccaatccc
agggatgaagaatgtgaaagaatcgttgcaggaataaatcagttgatgacactagatatt
gcttcagcatttgtggcccctgtggatctgcaagcttatcccatgtactgcactgtagtg
gcatatccaacggatctaagtacaattaaacaaagactggaaaacaggttttacaggcgg
gtttcttccctaatgtgggaaattcgatacatagagcataacactcgaacatttaatgag
ccgggaagcccaattgtgaaatctgctaaatttgtgactgatcttcttctacattttgta
aaggatcaaacttgttataacataattccactttataattcaatgaagaagaaggtttta
tctgactctgaggaagaagagaaagatgctgatgtgccaggaacttctacccgaaaaagg
aaggaccatcagcctagaagaagattacgtaacagagctcagtcttatgatattcaagca
tggaagaaacaatgtcaggaattgttaaatctcatatttcagtgtgaagattcagagcct
ttccgacagccagtagatctccttgaatatccagactacagggacatcattgacactcca
atggattttgctactgttagagaaaccttagaggctgggaattatgagtcaccaatggag
ttatgtaaagatgtcagacttatttttagcaattccaaagcatatacaccaagcaaaaga
tcaaggatttacagtatgagtttgcgcctgtctgctttctttgaagaacacattagttca
gttttatcagattataaatctgctcttcgttttcataaaagaaatactataaccaagaga
aggaagaaaaggaacagaagtagttctatttccagtagtgctgcatcaagccctgaaagg
aagaaaaggatcgtaaaaccccagttaaagtcagaaatctctacctctccattctctaca
cctacacgatcagtaccaccaaggcacaatgctgctcagataaatggtaaaacagaatcc
agttctgtggttcgaaccagaagcaaccgagtaattacagatcccgttatcaatactgag
caaccatctacttcatcagctgcaaagaattttattccaaaagctaatacatctgcagtg
ccagggaaaacaatactagaaaattctgtgaaacattccaaagccttgaacactctgtca
agtcctggtcaatccacttttagtcctggcactaggaataatactgcaaaagaaaatatg
gaaaaggaaaaacccgtcaaacgtaaaatgaagtcatctgtactctcaaaggcatccact
ctttcaaagtcatcacctgtcattgagcaaggagattgtaagaacaatgcttttgtacca
ggaaccattcaagtaaatggtcatggaggacagccatcaaaacttgtgaagagaggacct
ggaaggaaacctaaggtagaagttaataccagtagtggtgaaattatacacaagaaaagg
ggtagaaaacccaaaaaactacagtatacaaagacagaaaatgcagaacaaaataacatg
catcccatcagagatgaagtggttccttcttcaacatgcaattttctttctgaaactaat
atggttaaggaggatttgttacagaaaaagagtcgtggaggcagaaaacccaaaaggaag
atgaaaacacaaaaactagattcagatctcatagttcctgcaaatgttaaagtactaagg
agaagtaaccgaaaaaagactgatgatcccattatagatgaggaagaagagtttgaggag
ctcaaaagctctgaaccccacatgagaactagaaaccaaggtcgaaggacagctttctat
aatgaggatgactcggaagaggagcaaaggcagctgttatttgaagacacctctttgact
tttggaacttctagtagaggacgagtccgaaagttgactgaaaaggcaaaagcaaattta
attggttggtaa

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