Sciurus carolinensis (gray squirrel): 124988284
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Entry
124988284 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: syntaxin-binding protein 5-like
KO
K08518
syntaxin-binding protein 5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124988284
Membrane trafficking [BR:
ncar04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124988284
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
124988284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_HPS5
WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Lgl_C
EIF3I
Beta-prop_NUP159_NUP214
Synaptobrevin
Beta-prop_VPS8
Beta-prop_Vps41
WD40_like
MIOS_WD40
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
124988284
NCBI-ProteinID:
XP_047413590
LinkDB
All DBs
Position
7:complement(18661590..18834799)
Genome browser
AA seq
1113 aa
AA seq
DB search
MRKFKKVLDGLTAGSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSA
LAFDPVQKILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTL
HLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIM
WNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAIHS
VAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVEFKT
TRSGEPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEP
YAVVVLLEKDLVLIDLAQNGYPIFENPYPLNIHESPVTCCEYFADCPVDLIPALYSVGVR
QKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSKVF
EKSRNKDDRPNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVITEVIPM
LEVRLLYEINDVDSPEGEQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKV
KNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLAVNSSYGLVVFGNCNGIAMIDYLQKAV
LLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDINEGTVVPEDRCKSPTSAKMSRKL
SLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESREAISALHFCETFTRKTDSSPSPSLWVG
TTLGTVLVIALNLPPGGEQRLLQPVIVSPSGTILRLKGAILRMAFLDTTGCLMPPAYEPW
KEHNVPEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQNCAYKQN
ITETSFVLRGDIVALNNSICLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCF
TNNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFXKGLFGGGAQS
LDREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLSDL
EERTAAMLSSADSFSKHAHEMMLKYKDKKWYQF
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaattcaagaaggtgctggacggcctgaccgccggctcctcggcctcgcagcag
cagcagcagcagcagcacccgccggggaaccgggagcccgagatccaggaaacgctccag
tccgagcacttccagctctgtaagactgttcgacatggatttccctatcaaccttcagcc
ctggcctttgatcctgtacagaagatcctggcagtgggaactcagactggtgctttaagg
ctctttggtcgtccgggagtagaatgttattgccaacatgacagtggagctgctgttatt
cagctccagttcctgattaatgagggagctcttgtgagtgccttggctgatgacacctta
cacttatggaatttacgtcaaaaaagacctgccatactgcattcacttaaattttgccga
gaaagggttacattttgccatctgcctttccagagtaagtggctctatgtgggcactgaa
cgaggtaatatacatattgtcaatgtggagtccttcacactctcaggctacgtcattatg
tggaataaagccattgaactatcatctaaatctcacccaggacctgttgtccacataagt
gataatccaatggatgagggaaagcttttgattggttttgaatctggaacagtagtctta
tgggatctcaaatcaaagaaagccgactatagatacacatatgatgaggctattcactca
gttgcttggcatcatgaaggaaaacagtttatttgtagtcattcagatggcaccttgacc
atatggaatgtgaggtcccctgctaagcctgtacagacaatcacaccacatggaaaacag
ttaaaggatgggaagaaaccagaaccttgcaaacctatcctcaaggtggagttcaaaacg
acaagatctggggaaccttttattattttatcaggaggtttgtcatacgatactgtggga
agaagaccttgcttaacagtaatgcatgggaaaagtactgctgtgctggagatggactat
tcaattgttgacttcctaacactatgtgaaacaccatacccaaatgattttcaagaacca
tatgctgttgttgttcttctagaaaaggatttagtacttatagaccttgcacaaaatgga
tatcctatatttgaaaacccctaccctttgaatatacatgagtcccctgttacatgttgt
gaatattttgctgattgtcctgtggatcttattcctgcactttattctgttggagttaga
cagaaacgtcaaggttacagcaaaaaggaatggcccatcaatggaggtaattggggcttg
ggtgctcaaagttacccagaaataattattacagggcatgctgatgggtcagttaagttc
tgggatgcctctgcaataactctacaagtattatataaactaaaaacatctaaagtattt
gaaaagtcaagaaataaagatgacagaccaaatacagacattgtagatgaagatccatat
gccattcagatcatctcctggtgcccagaaagtagaatgctgtgcatagctggagtttca
gctcatgtcattatttatagattcagcaaacaggaagtgattacagaagttattccgatg
cttgaagttcgattgttatatgagataaatgatgtggattctccagagggtgagcagcca
ccacctttgtcaacccctgtaggaagttctaatcctcaacccattcctcctcagtctcat
ccatctaccagtagcagttcatctgatggacttcgtgataatgtaccttgtttaaaagtt
aaaaactcaccacttaaacaatcaccaggttatcagacagaactagttattcagttggta
tgggtgggtggagaaccaccacaacaaataaccagcttggcggtcaattcttcctatgga
ctggtggtttttggcaactgtaatggcattgccatgattgactacctccagaaagcagta
ctgctgaacctgggcaccattgaattatatggctctaatgatccttaccgcagagaaccc
cgatctcctcgtaaatctcgtcaaccttcaggagcaggtctctgtgatattaatgaaggg
actgtagtcccagaggatcgctgcaaatctccaacttctgcaaagatgtcaaggaagtta
agcttgcctactgacctgaagcctgatttagatgtaaaagataattccttcagcagatca
cggagttcaagtgtaacaagcatagacaaagaatcccgagaagcaatctctgctcttcat
ttctgtgaaacttttactcgaaagacagattcatccccttccccgagtctatgggttgga
acaacactaggaacggtgcttgtcattgcactgaaccttcccccaggaggagagcaaaga
cttcttcagcctgtgattgtttctccaagtggtactatattgagattaaaaggtgcaatc
ttgagaatggcatttctggatacaacaggctgcttaatgccacctgcatatgaaccctgg
aaagaacataatgttcctgaagaaaaggatgaaaaagaaaaattgaaaaaacggcggcct
gtctcagtttctccctcctcttctcaggaaattagtgaaaaccaatatgcagtgatatgt
tctgaaaagcaagcaaaagtaatctcactgccaacccagaactgtgcttataagcaaaac
attacagaaacctcatttgtgcttcgtggagatattgtagcattgaataacagcatctgc
cttgcatgtttctgtgctaatggccatattatgacttttagtctgccaagtttaaggcct
ctgttggatgtgtattacttgcctctcaccaatatgcggatagccagaacattctgcttc
accaacaatggacaagcattatatctggtttcacctacagaaattcagaggcttacatat
agtcaagagacctgtgaaaatcttcaggaaatgttgggtgaactcttcactcctgtagaa
acacctgaagcaccaaacaggggattcnttaaaggcttatttggaggtggtgcacagtcc
cttgatagagaagaactatttggagagtcatcctcaggaaaggcttcacggagtcttgca
cagcatatccctggccctggtggcattgaaggtgtgaaaggggcagcctctggagttgtt
ggtgaattagcacgagccaggttggccttagatgaaagagggcagaagctcagtgactta
gaagaaagaacggcagctatgttatcaagtgcagattcattttcaaaacatgctcatgag
atgatgttgaaatacaaagataaaaagtggtaccagttctga
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integrated database retrieval system
