Sciurus carolinensis (gray squirrel): 124988316
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Entry
124988316 CDS
T08117
Name
(RefSeq) activating signal cointegrator 1 complex subunit 3 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124988316
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124988316
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
124988316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_22
Helicase_PWI
AAA_19
T2SSE
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
124988316
NCBI-ProteinID:
XP_047413664
LinkDB
All DBs
Position
7:61896492..62301364
Genome browser
AA seq
2203 aa
AA seq
DB search
MALPRLTGALRSFSNVTKQDNYSEDVADLKLKRSRLHEQVLDFGPTWKNIVKFLNENLEK
SKMQSINEDLKDILQAAKQIVGTDNGREAIESGAAFLFMTFHLTDSVGHMETKAIKQMFG
PFPSSSATTACNATNRIISHFNQDDLTALVQMTEKESSDKVFFGKNLAFSFDMHDLDHFD
ELPINGEAQKTISLDYKKFLNEHFQEPSTPELKPVEKTNGSFLWCEVEKYLNATLKEMTE
APRIEDLCCTLYDMLASVKSGDELQDELFELLGPEGLDLIEKLLQNRITIVDRFLNSSND
HKIQALQDNCKKILGENTKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKSGEDAEV
SGDGLMGFDPKELRIHREQALLNARSVPILSRQRDMDIEKIRYPHVYDSQAEARKTSAFI
AGAKMILPEGIQRENNKLYEEVRIPYSEPMPVGLEEKPVYIQDLDEIGQLAFKGMRRLNR
IQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPM
KALAAEMTNYFSKRLEPLGIIVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDV
ALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVAT
FLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVLKQVKAGHQVM
VFVHARNATVRTAMSLIERAKNCGQIFCFLPTQGPEYGHAEKQVQKSRNKQVRELFPDGF
SIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFV
DLGILDVMQIFGRAGRPQFDKFGEGVIITTHDKLSHYLTLLTQQNPIESQFLESLADNLN
AEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLRKHREQLVIEVGR
KLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAE
EFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDS
AYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILT
RLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVT
LSIYPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPI
FEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCKAYE
ALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIA
PLKALVRERMDDWKVRIEEKLGKRVIELTGDVTPDMKSIAQADLIVTTPEKWDGVSRSWQ
NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL
ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVL
IFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTVRDSNLKLTLAFGIGMH
HAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFP
ITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEI
AGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLVELELSY
CIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECTIEELLSILSDAEEYTDLP
VRHNEDHMNSELAKCLPVELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQ
ALRVCQAMLDVAANQGWLVTALNITNLVQMVIQGRWLKDSSLLTLPNIEQHHLHLFRKWK
PIIKGSRARCRTSIECLPELIHACGGKDHIFSSMVEKELQATKTKQAWNFLSRLPVINVG
ISVKGSWDDLVEGHNELSVSTLTADKRDDNRWIKLHADQEYVLQVSLQRVHFGFHKGKQE
SSAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYVRNHHVASLSFFTPEIPGRYIFTL
YLMSDCYLGLDQQYDIYLNVTQESISTQVNMEVSNAFTDLAVK
NT seq
6612 nt
NT seq
+upstream
nt +downstream
nt
atggctttacctcgcctcacaggagccttgcgctccttttcaaatgttaccaagcaagac
aattatagtgaagatgtggctgacttaaagctaaagcgatccagacttcatgaacaagtt
ttagattttggaccaacatggaagaatatagtaaaatttttgaatgaaaacctggagaag
agtaaaatgcaaagtataaatgaagacttaaaagatatattacaagcggcaaaacaaata
gttggaacagataatgggagagaagcaattgaaagtggggctgcatttctctttatgaca
tttcacttgacggattctgttggtcacatggagacaaaggctatcaagcagatgtttggc
ccctttccatcatcatctgccactacagcttgtaatgccactaatcgaatcatttctcat
tttaatcaagatgatcttactgctcttgtccagatgacagaaaaggaatctagtgataaa
gtattttttggtaaaaatttagcattttcatttgacatgcatgatctggaccactttgat
gaactgccaatcaatggtgaagcccagaaaactataagcttagattacaagaagtttctg
aatgaacattttcaggagccttccaccccagaactcaagcctgtggaaaaaactaatggc
tcctttttgtggtgtgaagttgagaaatacctaaatgcaactttgaaggaaatgactgaa
gcaccaagaatagaagatctttgctgcactttatatgacatgcttgcttctgttaaaagt
ggtgatgaacttcaggatgagttatttgaattgcttggacccgaaggacttgatcttatt
gagaaactcctccagaacagaattacaattgtggatcgatttcttaattcttcaaatgat
cataagattcaggctcttcaagacaattgcaaaaaaattctaggagagaataccaaacct
aattatggttgtcaagtcactattcagtctgaacaagaaaaacagttaatgaaacagtat
cgacgtgaagaaaaaagaattgctagacgagaaaaaaagtctggagaagatgcagaagtt
tctggagatggacttatgggctttgatcctaaggaattgcggatacacagagagcaggca
cttctgaatgctagaagtgttccaattcttagcaggcagagagacatggacattgaaaaa
attcgttatccccatgtttatgattcccaggctgaagccaggaaaacatcagcattcatt
gctggtgcaaagatgattttaccagaaggaatccaaagagagaataacaagctttatgaa
gaagtaagaattccctatagtgaaccaatgccagttggcttggaggagaagccagtttat
atccaagacttagatgagattggacagttggcttttaaaggaatgaggagacttaataga
atccagtcaatagtatttgaaactgcctacaacaccaatgagaatatgctgatttgtgcc
cctactggagctggaaagaccaacattgcaatgcttacagtcttgcatgaaattcgccaa
cattttcaacaaggtgttatcaaaaagaatgaatttaagattgtatatgttgctccaatg
aaagccttggcagctgaaatgacaaattacttcagcaaacgtctagagccactgggtatc
attgtgaaagaattaactggtgatatgcagttgtcaaaaaatgaaattttacgaactcag
atgcttgtgaccacaccagaaaaatgggatgtagtgacaagaaagagtgttggggatgtt
gctctttcccaaattgtaaaactccttattcttgatgaagttcatttgctgcatgaagat
agaggaccagtattagaaagcatagttgcacgtactttacgacaggttgaatccacacag
agtatgataaggattcttggactgtctgcaacattacccaactacctcgatgttgctaca
tttttacatgtcaatccctacattggacttttctactttgatggccgttttcgaccagta
cctcttggacaaacatttttggggattaaaagtgcaaataagatgcagcagttgaataac
atggatgaagtatgctatgaaagtgttttgaagcaagtaaaagctggacaccaggttatg
gtgtttgtacatgctcgaaatgccactgtaagaacagctatgtctctgatagaaagagca
aaaaattgtggccagatattctgctttctacctacccaaggacctgagtatggacatgca
gaaaaacaggtgcaaaagtcaagaaacaagcaagtacgagaattattcccagatggtttt
agtattcatcatgcaggaatgcttcggcaggacagaaatttagttgaaaatttgttttcc
aatgggcatatcaaagtcctggtctgtacagctacattagcctggggtgtcaatctccct
gctcatgctgttattattaagggaacacaaatatatgctgcaaaaagaggctcctttgtt
gaccttggaattttagatgtcatgcagatatttggccgagctggacgaccacaatttgac
aaatttggggaaggagtcattataacaacacatgataaactcagccattacctcacttta
ctcactcaacaaaacccaattgagagtcagtttctggaaagccttgcagataacctcaac
gcagagattgcactggggacagtcacaaatgtggaagaagcagtgaagtggataagttac
acttacctttatgtacggatgagagcaaatccattagtgtatggcatcagtcacaaagct
tatcagattgacccaacattacgaaagcatcgagaacagttagtcattgaagttggacga
aaactagacaaggctcagatgattcgtttcgaagagagaactggttatttttcctcaaca
gacttgggtagaaccgccagccactactacattaagtacaacaccattgagacctttaat
gaactcttcgatgctcacaaaacagaaggtgacatatttgctatagtctccaaagctgaa
gaatttgatcagatcaaggtcagagaagaagaaatagaggagttagatgctctattaaac
aacttttgtgaactctcagctcctggaggtgtagaaaatagttatgggaaaataaacatc
ttacttcaaacttacatcagtcgaggagagatggatagtttctcccttatatcagattca
gcatacgttgcacagaatgcagctagaattgtccgtgccctttttgaaattgctctgagg
aaacgttggcctaccatgacctacaggctcctgaatcttagtaaagtcattgacaagagg
ctttggggttgggctagccctttgagacaattttcagtgttaccaccacacattctaaca
agattagaagaaaaaaaacttactgtagataagctgaaagacatgaggaaagatgaaata
ggtcacattttgcatcatgtgaatattggactgaaggtcaaacaatgtgttcatcagatt
ccttctgttatgatggaagcatccattcaacccatcacacggactgtcctccgagtgaca
ctcagcatctaccctgatttcacatggaatgatcaggtccatgggacagtaggagaaccc
tggtggatttgggtggaagatcctacaaatgatcacatttaccattcagagtattttcta
gctcttaaaaaacaggtcattagtaaagaagctcaactactggtatttacaatccctatt
tttgagcctttgccttcccaatactatatccgagcagtgtctgatagatggttaggagct
gaggctgtttgtattatcaactttcaacatctgattctaccagagaggcatccgccccat
acagaattactggatcttcagcctttgccagttacagctttgggatgtaaagcatatgaa
gccctgtacaacttcagccactttaaccctgtgcagacacaaatatttcatacactgtat
cacacagactgtaatgtcctacttggagcacccactggatcaggaaagacggttgcagct
gaattagctattttcagagtcttcaacaagtatcccacttcaaaggcagtatatattgca
cctctaaaagccctagtccgtgaaagaatggatgactggaaggttagaatagaagaaaaa
cttggtaaaagagttattgaactaacaggggatgtgactcctgatatgaaatccattgcc
caggctgacctcattgtcactacaccagagaagtgggatggcgtcagcagaagctggcaa
aataggaactatgttcagcaagttactattctcatcatagatgagattcatctgcttggg
gaagaaagaggtcctgttctagaagtcattgtatctcgaacaaattttatctcctcacac
acagaaaaacctgttaggatagttggactgtctactgcattagctaatgccagagacctt
gctgactggctaaatattaagcagatgggcttgttcaacttccgtccatcagtacgacct
gttccactggaagttcacattcaaggcttcccaggtcaacattattgtccccgaatggcg
agtatgaacaagcctgcatttcaggcaattagaagtcattctccagctaaacctgttttg
atatttgtctcatcaagacgtcaaactagacttactgctttagaattgatagcctttctg
gctactgaagaagatccaaagcagtggttgaacatggatgaaagagaaatggaaaacatc
atcggaacagtacgagattccaacttgaagctgacacttgctttcggaataggaatgcat
catgctggtctccatgaaagggaccgaaaaacagtagaggaactatttgtgaactgtaaa
gttcaggttcttattgctacaagcacattagcctggggtgtaaactttccagctcattta
gtaattattaaaggaacggaatattacgatggaaaaacaagacgttatgtagattttccc
attacagatgtgctccagatgatgggaagagctgggcgccctcagtttgatgaccaaggc
aaagctgtaattctggttcatgatataaaaaaagacttttacaaaaaatttctttatgaa
cctttcccagtagaatcaagcttattaggagtgctgtctgaccacttaaatgcagagatt
gctggtggtacaataacatctaagcaagatgcaatggactatatcacgtggacttatttt
ttccgacgtcttatcatgaaccccagctactacaatttaggtgatgtgagccatgattct
gtgaataagtttctgtcccatctgattgagaagtccctggttgaattggaactttcctac
tgtattgagattggagaggataatcggagcattgagcctctgacatatggccgaattgcc
tcttattactatttgaagcaccagacagttaaaatgttcaaggaccgtttgaaacctgaa
tgcactattgaagaattgctgtcaattctgagtgatgcagaagagtacacagatttgcca
gtaagacacaatgaagatcatatgaacagtgaattggcaaaatgtctccctgttgaatta
aatccccattcatttgacagccctcacaccaaagcacatctcctgcttcaggcacatctc
agccgagccatgctgccctgcccagattatgacactgataccaaaacagtcttggatcaa
gccctcagagtatgtcaggcaatgctggatgtggctgcaaaccaaggttggctggtgact
gccctaaatataaccaacctggttcagatggtaatccagggccggtggctaaaagactct
tctcttcttacactaccaaacatagaacagcaccatcttcatctttttaggaaatggaaa
ccaatcataaagggctcacgtgctaggtgccgaacctccattgagtgccttcctgaactg
attcatgcttgtggagggaaagaccatatattcagctccatggtcgagaaggagctacag
gccaccaaaacaaagcaggcatggaatttcttatctcgcttgccagtgataaatgttggc
ataagtgttaaaggctcgtgggatgacttagttgaaggacacaatgaactctctgtctca
actctgactgcagacaaacgagatgacaacagatggatcaaattgcatgctgatcaggag
tatgtgctccaagtcagcttgcagagagtccactttgggttccacaagggaaagcaagag
agctctgcagttacccctcgatttcccaaatcgaaagatgaaggatggtttttgatatta
ggagaagtggataagagagaacttattgctttaaaacgagtaggatatgttcgaaatcat
catgtcgcttctctttctttttttacccctgaaatacccggaaggtatatcttcactctc
tatctcatgagtgactgctaccttggtctggatcagcagtatgacatttacctcaatgtc
acacaagaaagcatttccacacaggtcaacatggaagtctccaatgccttcactgacctg
gcagtaaaataa
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integrated database retrieval system
