KEGG   Sciurus carolinensis (gray squirrel): 124988773
Entry
124988773         CDS       T08117                                 
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X1
  KO
K08525  retinoid X receptor beta
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03320  PPAR signaling pathway
ncar04659  Th17 cell differentiation
ncar04919  Thyroid hormone signaling pathway
ncar04920  Adipocytokine signaling pathway
ncar04928  Parathyroid hormone synthesis, secretion and action
ncar05200  Pathways in cancer
ncar05202  Transcriptional misregulation in cancer
ncar05207  Chemical carcinogenesis - receptor activation
ncar05216  Thyroid cancer
ncar05222  Small cell lung cancer
ncar05223  Non-small cell lung cancer
ncar05226  Gastric cancer
ncar05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    124988773
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    124988773
   03320 PPAR signaling pathway
    124988773
   04919 Thyroid hormone signaling pathway
    124988773
   04928 Parathyroid hormone synthesis, secretion and action
    124988773
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    124988773
   05202 Transcriptional misregulation in cancer
    124988773
   05207 Chemical carcinogenesis - receptor activation
    124988773
  09162 Cancer: specific types
   05226 Gastric cancer
    124988773
   05216 Thyroid cancer
    124988773
   05222 Small cell lung cancer
    124988773
   05223 Non-small cell lung cancer
    124988773
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    124988773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ncar03000]
    124988773
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ncar03310]
    124988773
Transcription factors [BR:ncar03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    124988773
Nuclear receptors [BR:ncar03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   124988773
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 124988773
NCBI-ProteinID: XP_047414474
LinkDB
Position
7:121396327..121403139
AA seq 535 aa
MSWTARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAGEQQTPE
PEPGEAGRDGMGDSGRDSRSPDSSSPNPLAQGVPPPSPPGPPLPPSSAPSLGGSGAPPPP
PMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPP
VLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCR
DNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVD
RILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSS
LPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLS
RVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQK
YPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgtcttggaccgctcgcccgcccttcctcccccagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggatcccgcggcggcggcagcggcggcagccggagaacaacaaaccccggag
ccggagccgggggaggctggacgggacgggatgggagacagcgggcgggattcccgaagc
ccagacagctcttctccaaatcctcttgcccagggggttcctcccccttctcctcctggg
ccacctctgcccccttcatcagccccatcccttggaggctctggggctccacccccacct
ccaatgccaccacccccgctgggctcccccttcccagtcatcagttcttccatggggtcc
cctggtctgccccctccagctcccccaggattctccgggcctgtcagcagcccccagatt
aattcaacagtgtcgctccctgggggtgggtctggcccccctgaagatgtgaagccacca
gtcttaggggtccggggactgcactgtccaccccctccaggtggccctggggctggcaaa
cggctttgtgcaatctgcggggatcgcagctcaggcaaacactatggggtttacagctgt
gagggctgcaagggctttttcaagcgcaccatccgtaaggacctgacttactcatgccgg
gacaacaaggactgtacagtggacaagcgccagcggaatcgctgtcagtactgtcgctat
cagaagtgcctggccactggcatgaagagggaagccgtacaggaggagcgtcagcgggga
aaggacaaggacggggatggggagggggctgggggagccccggaggagatgcctgtggac
aggatcctggaggcagagcttgctgtggagcagaagagtgaccagggcgttgagggtcct
gggggaaccgggggtagcggcagcagtccaaatgaccccgtgactaacatctgtcaggca
gctgacaaacagctattcacacttgttgagtgggcgaagaggatcccacacttttcctcc
ttacctctggatgaccaggtcatattgctacgggcaggctggaatgagcttctcattgcc
tccttctcccaccggtccattgatgttcgagacggcatcctcctggccacaggtcttcat
gtgcaccgcaactcagcccattctgcaggcgtgggagcaatctttgatcggtccctctcc
agggtgctgacagagctagtgtccaaaatgcgtgacatgaggatggacaagacagagctt
ggctgcctgagggcaatcattctgtttaatccagatgctaagggcctctccaaccccagc
gaggtggaggtcctgcgggagaaagtgtatgcctcattggagacctattgcaaacagaag
taccctgagcagcagggacggtttgccaagctgctgctacgtcttcctgccctccggtcc
atcggccttaagtgtctagagcatctgtttttctttaagctcattggtgacacccccatc
gacaccttccttatggagatgcttgaggctccccaccagctggcctga

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