Sciurus carolinensis (gray squirrel): 124988845
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Entry
124988845 CDS
T08117
Name
(RefSeq) transcription factor EB isoform X1
KO
K15590
transcription factor EB
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04020
Calcium signaling pathway
ncar04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124988845
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124988845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124988845
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
124988845
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Gene cluster
GFIT
Motif
Pfam:
MITF_TFEB_C_3_N
DUF3371
HLH
Motif
Other DBs
NCBI-GeneID:
124988845
NCBI-ProteinID:
XP_047414597
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Position
7:113941179..113987938
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AA seq
446 aa
AA seq
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MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQLGGPPTPAINTPVHFQSPP
PVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASP
GVRAGHVLSTSASNSAPNSPMAMLHISSNPEKELPLSSSHLNVYSSDPQVTPSLVGVTSS
SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
TSPSGVNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEALPALPPQAPLPPPAQPPSP
FHHLDFSHSLGFGGGSDEGSTGYSDPLGPEHGSPFPNLSKKDLDLMLLDDSLLPLASDPL
FSTMSPEASKASSRRSSFSMEEGDVL
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcgcatcgggctgcgcatgcagcttatgcgggagcaggcgcagcaggaggag
cagcgggagcgcatgcagcagcaggctgtcatgcattacatgcagcagcagcagcagcag
cagctggggggacctcccaccccagccatcaacacccccgtccacttccagtcgccgcca
cctgtgcctggggaggtgctgaaggtgcagtcctacctggagaatcccacctcctaccac
ctgcaacagtcccagcaccagaaggtgcgggagtacctgtcggagacctacgggaacaag
tttgccgcccacatcagcccggctcagggctccccgaagcccccgccagccgcctccccc
ggagtacgggccggacatgtgctgtccacctcggccagcaacagtgcgcccaacagtccc
atggccatgctgcacatcagctccaaccctgagaaggagctgcccctctccagcagccac
ctgaacgtgtacagcagcgacccccaggtcacaccctccctggtgggtgtcaccagcagc
tcctgccctgcggacctgacccaaaagcgagaactcacagatgctgagagccgggccctg
gccaaggagcggcagaagaaggacaatcacaacctaattgagcggagacggaggttcaac
atcaatgaccgcatcaaggagctgggaatgctgatccccaaggccaatgacctggacgtg
cgctggaacaagggcaccatcctcaaggcctcggtggactacatccggaggatgcagaag
gacctgcagaagtccagggagttggagaaccactctcggcgcctggagatgaccaacaag
cagctctggctccgcatccaggagctggagatgcaggcccgagtccacggcctccccacc
acctctccatcaggcgtgaacatggccgagctggcccagcaggtggtgaagcaggagctg
cccagcgaggagggcccaggggaggcgctcatgctgggggcagaggtccccgaccccgag
gcgctgccagctctgcccccccaggccccgctgcccccacctgcccagccaccatcccca
ttccatcacctggacttcagccacagcctgggctttgggggcgggagtgacgaggggtcc
acaggctactctgatcccctggggccagagcatggctccccattccccaacctgtccaag
aaggatctggacctcatgctcctggacgactccctgctgccgctggcctctgaccccctc
ttctccaccatgtcccccgaggcctccaaggccagcagccgccggagcagcttcagcatg
gaggagggcgacgtgctgtga
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