Sciurus carolinensis (gray squirrel): 124989158
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Entry
124989158 CDS
T08117
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124989158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124989158
Spliceosome [BR:
ncar03041
]
Complex C
Other components
Step II factors
124989158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
124989158
NCBI-ProteinID:
XP_047415098
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Position
7:complement(53418414..53461054)
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AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGSRCRLPAADSLMHLAKSPSAKPTLTVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctggccgcttcttatggttcgggttcagggtccgaatcg
gactcggacagtgagggcagtaggtgtcggctgccagccgccgactccctcatgcacctg
gctaagtcgccttcggcaaagcccactctgacagtggcggtggactcggctccggaggtg
gcagttaaggaagatttagagactggagttcaccttgaccctgctgtcaaagaagtccaa
tataatcctacctatgagactatgtttgctcctgagtttggaccagaaaatccctttaga
acacagcaaatggctgctcctagaaatatgctttctggctatgctgaaccagctcatatc
aatgatttcatgtttgaacagcaaagaagaacttttgccacatatggttatgcattggac
ccttcattagataatcatcaagtatctactaaatacattggttctgtagaagaagctgaa
aaaaatcaaggtttaactgtatttgaaaccggtcaaaagaaaacagaaaagaggaaaaag
ttcaaagaaaacgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaagatgtagccaaaccctcagaagaagaacaaaaagaattggatgaaatcaca
gcaaagaggcagaagaaaggcaaacaggaagaagagaaacctggggaggaaaagacaatc
ttacatgttaaagaaatgtatgactatcagggcaggtcctatcttcacatacctcaagat
gttggtgtcaatctacggtcaactgtgccacctgaaaagtgctatcttcccaaaaaacaa
attcatgtgtggtctggacatacaaagggtgtcagtgcagtcagattatttcctctctct
ggtcatttattgctgtcttgttccatggattgtaaaattaagctgtgggaggtttatggt
gaccggcgttgtctgagaacatttattggtcacagtaaagctgttagggacatctgcttc
aatactgcaggaacacaattccttagcgctgcctatgacagatatcttaaactctgggat
actgaaacaggacagtgtatatcaagatttacaaaccgaaaagtaccctattgtgtcaaa
ttcaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataaaaagatc
gtgcaatgggacattcgaagtggagaaattgtgcaggaatatgatcggcatttgggagct
gttaataccatcgtttttgttgatgagaataggagatttgtgagcacatctgatgataag
agcctaagagtttgggaatgggatatccctgtggatttcaagtacatagcagaacccagt
atgcattcaatgcctgcagtgactttgtctccaaatgggaaatggctagcatgccaatca
atggacaatcaaatcttaatttttggagcacagaacagattcagattaaataagaaaaaa
atttttaagggacatatggtagcaggctatgcttgtcaagtggacttttcaccagacatg
agctatgtgatttcaggagatggaaatggaaaattaaacatttgggactggaagaccaca
aaactctatagccggtttaaagctcatgataaagtgtgtataggtgcagtatggcatcct
catgaaacatctaaagtcattacatgtggttgggatggtctcattaaattgtgggattaa
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