Sciurus carolinensis (gray squirrel): 124989553
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Entry
124989553 CDS
T08117
Name
(RefSeq) tubby-related protein 4 isoform X1
KO
K24720
tubby-related protein 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
124989553
Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
Other domain-containing proteins
Tubby family proteins
124989553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR35_TULP_N
Tub
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_WDHD1_1st
SOCS_box
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40
WD40_Prp19
Beta-prop_HPS5
WDR55
Beta-prop_ELP1_1st
EIF3I
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
124989553
NCBI-ProteinID:
XP_047415364
LinkDB
All DBs
Position
7:complement(9143228..9384823)
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AA seq
1545 aa
AA seq
DB search
MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFT
SSHCRRDRSTPQRINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYEGRWSVEL
VNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHWSSEINLESQITCGIWTPDDQ
QVLFGTADGQVIVMDCHGRMLAHVLLHESDGILSMSWNYPIFLVEDSSESDTDSDDYSPP
QDGPAAYPIPVQNIKPLLTVSFTSGDISLMNNYDDLSPTVIRSGLKEVVAQWCTQGDLLA
VAGMERQAQLSELPNGPLLKSAMVKFYNVRGEHIFTLDTLVQRPIISICWGHRDSRLLMA
SGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVSKLTLPPRLCSYLSTAFIPTIKPPI
PDPNNMRDFVSYPSAGNERLHCTMKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKL
RPEFVIMDPRTDSKTDEIYGNSLISTVIDSCNCSDSSDIELSDDWAAKKSPKISRASKSP
KLPRISIEARKSPKLPRAAQEISRSPRLPMRKPSIGSPSLTRREFPFEDITQHNYLAQVT
SNIWGTKFKIVGLAAFLPTNLGAVIYKTSLLHLQPRQMTIYLPEVRKISMDYINLPVFNP
NVFSEDEDDLPVTGASGVPENNPPCTVNIPIAPIHSSAQAMSPTQSIGLVQSLLANQNVQ
LDILTNQTTVVGAAEHAGDSATQYPVSNRYSSPGQVIFGGVEMGRIIQNPPQLPLPPPPP
PPQGTMQLSVVDHGDRDHEHLQKSAKTLRPVPQLAAEGDTVVFSAPQEIQVTKMNPPPPY
PGTIPAAPTTAAPPPPLPPQAPVDVCLKKGDFSLYPTSAHYQPPLGYERITTFDSSGNVE
EVCRPRTRMLCSQNTYTLPGPGSSATLRLTATEKKVSQPCTSATLNRLTVPRYSIPTGDP
PPYPEIASQLAQGRGAAQRLDSSLIHATLRRNNREVALKMAQLADSSRAPLQPLAKPKGG
LGGAVAQLPARPPPALYTCSQCSGAGPSSQPGTILAHAVSTSPLASQSSYSLLSPPDSAR
DRTDYVNSAFTEDEALSQHCQLEKAPRHPPLPEAAVTVKRPPPYQWDPVLGEDVWVPQER
TAQTTVPNPLKLPPLMLGQGQHLDVTRVPFVSPKSPASPTATFQTGYGMGVPYPGSYNNP
PLPGVQAPCSPKDALTPTPFAQQESAVVLQPAHPPSLSYCTLPPMYPGSSTCSSLQLPPI
ALHPWSSYSACPPMQNPQGTLPPKPHVVVEKPLVSPPPPDLQSHMGTEVMVETADNFQEV
LSLTESPVPQRTEKFGKKNRKRLDSRAEEGSVQAITEGKVKKEARTLSDFNSLISSPRLG
REKKKVKSQKDQLKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRT
ASELEEFKCRKASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQ
IELEGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRLK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcagcggtggaacatggacctgtgctttgtagcgactccaacatcctctgtctg
tcctggaaggggcgcgtccccaagagtgagaaggagaagcctgtatgcagaaggcgctac
tacgaggaaggctggctggccacgggcaatgggcgtggtgtggtgggcgtgacttttact
tccagccactgccgcagggacaggagcactccccagaggataaacttcaacttgcggggc
cacaatagtgaggtggtgctggtgaggtggaatgagccgtaccagaagctggccacgtgt
gacgcagacggaggaatatttgtgtggattcagtacgaaggcaggtggtctgtggaactg
gtcaacgaccgaggggctcaggtgagtgatttcacatggagccacgatgggactcaagca
cttatttcatatcgagacgggtttgtcctggttggttctgtcagtggacaaagacactgg
tcatctgagatcaacttggaaagtcaaatcacatgcggcatatggactcctgatgaccaa
caggtgctgtttggcacggctgacgggcaggtgattgtcatggactgccatggcaggatg
ctggcccatgtcctcctgcatgagtctgacggcatcctcagcatgtcctggaactacccc
atcttcctggtggaagatagcagcgagagtgatacggactcagacgactactcccctccc
caagatggtcctgcagcgtaccccatcccagtgcagaacatcaagcctctgctcaccgtc
agcttcacctcaggagacatcagcttaatgaacaactacgatgacttgtctcccactgtc
atccgctcagggctgaaagaggtggtagcccagtggtgtacgcagggagacttgctggca
gttgctgggatggagcggcaggcccaactcagcgagctccccaacggtccccttctgaag
agtgccatggtcaagttctacaatgttcgaggggagcacatcttcacgctggacacgctt
gtgcagcgtcccatcatctccatctgctggggccacagggactcgcggctgctcatggcc
tcaggaccagccctatacgtggttcgtgtggaacaccgggtgtccagcctacagctgctg
tgccagcaggccatcgccagcaccctgcgagaggacaaggatgtcagcaagctgaccctg
cccccacgcctctgctcctacctctccaccgccttcatccccaccatcaagcccccaatt
ccagaccccaacaacatgcgagactttgtcagctacccctcagcgggcaacgagcggctg
cactgcaccatgaagcgcacggaggacgacccggaggtgggcggcccctgctacacactc
tacctggagtacctgggtgggctcgtgcccatcctgaaggggcggcgcatcagcaagctg
aggccagagttcgtcatcatggacccaaggacagacagcaagacagatgagatctatgga
aacagcttgatttctactgtgattgacagctgcaactgctcagactcaagtgacattgaa
ctgagtgacgactgggctgccaagaaatctcccaaaatttccagagctagcaagtcaccc
aaacttccaaggatcagcattgaggcccgcaagtctcccaagttgccccgggctgctcag
gagatctcccgatctccccggttgcctatgcgcaagccttccatcggctcacccagcctg
actcggagagagtttccttttgaagacattactcagcacaactatcttgctcaggtcacg
tccaatatctggggaaccaaattcaagatcgtgggcttggctgctttcctgccaaccaac
ctcggtgcagtgatctataaaaccagcctgctgcatctgcagccacggcagatgaccatc
tatctcccagaagttcggaagatttccatggactatattaacttacctgtcttcaaccca
aatgttttcagtgaagacgaagatgatttaccagtgacaggagcatctggtgtccctgag
aacaacccaccttgtaccgtgaacatccctattgcaccaattcacagctcagctcaagct
atgtcccccacacagagcatcgggctggtgcagtctctgctggccaatcagaatgtgcag
ctggacatcctgaccaatcaaacgacagtggtgggggcagcagaacatgcaggtgacagt
gccacccagtacccagtctccaaccggtactccagccctggacaggtgatttttggaggt
gtggaaatgggccgcatcattcagaaccctcctcagttgcccttaccgccaccgccgcca
ccgccacaggggaccatgcagctgtccgtggtggaccatggagaccgagaccatgagcac
ctacagaagtctgccaagaccctgcggccagtgcctcagttggcagcagagggggataca
gtagtcttcagtgccccccaggagatccaggtgacgaagatgaaccccccgcccccctac
ccaggaaccatccctgctgcccccaccacagcggcacccccgccccctctgccacctcag
gcccccgtagacgtgtgcttgaagaagggagacttctccctctaccccacgtcagcgcac
taccagcccccgctgggctacgagaggatcaccaccttcgacagcagcggcaacgtggag
gaggtgtgccggcctcgcacgcggatgctctgctcccagaacacctacaccctccctggc
ccaggcagctcagccaccctgaggctcactgccacggagaagaaggtctcccagccctgc
accagtgccaccctgaaccgcctgacagtccctcgctattccatccccacaggggaccca
cccccatatcctgaaattgctagccagctggcccaggggcggggtgctgcccagagactg
gacagcagcctcatccacgccaccctgcggaggaacaaccgcgaggttgcgctcaagatg
gcccagctggctgacagctcccgggccccactgcagcccctggccaagcccaagggcggc
cttgggggagccgtggcacagctgcccgcgcggcccccaccagctctctacacctgcagc
cagtgcagtggcgcagggcccagctcccagccaggcaccattctggcccacgctgtcagc
acctccccattggcctcccagtcctcctacagtctcctgagcccacctgacagtgcccga
gaccgcactgactacgtgaactcagccttcacggaggacgaggccctgtcccagcactgt
cagcttgagaaggccccaaggcaccccccgctgcccgaagctgctgtcactgtgaagcgg
cctcccccttaccagtgggaccctgtgctgggtgaggatgtttgggtcccccaggaaagg
acagcacagactacagtgcccaaccccttaaaactgccccctctgatgctagggcagggc
cagcacctggacgtgacccgagtgcccttcgtctcccccaagtctcccgccagccccact
gccactttccagacaggctatgggatgggagttccatatccaggaagctataacaacccc
cctttgcccggagtgcaggctccctgctccccaaaagatgccctgaccccaacgccattt
gcacaacaggagtccgccgttgtcctgcagccagcgcacccacccagcctctcctactgc
accttgccccccatgtacccaggaagcagcacgtgctccagtttacagctgccacccatc
gccttgcacccgtggagttcctacagcgcctgcccacccatgcagaacccccagggcact
ctccccccaaagccccacgtggtggtggagaagccccttgtgtccccaccaccgcctgac
ctccaaagccacatgggcacagaggtgatggtagagactgcagacaacttccaagaagtc
ctctccctgacagaaagccctgtcccccagcgaactgaaaaatttggaaagaagaaccgg
aagcgactggacagccgagcagaggaaggaagtgttcaggccatcactgaaggcaaagtg
aaaaaggaggctaggactttgagtgactttaattcactcatctccagtcctcgcttgggg
agagagaagaagaaagtgaagagtcagaaagaccaactgaagtcaaagaagttgaacaaa
accaacgagttccaggacagctcagagagtgagcccgagctgttcatcagcggggacgag
ctgatgaaccaaagccagggcagcaagaaggggtggaaaagcaagaggagtctgcgcacg
gccagtgaactggaggagttcaagtgccgcaaggccagtgagaaggaggacgggcgtctg
ggcagccaggggtttgtgtatgtgatggccaacaagcagcctttgtggaacgaggctaca
caggtgtaccagctggactttggagggcgggtgacccaggagtcagccaagaacttccag
atcgagttggaggggcggcaggtgatgcagtttggacggatcgacggcaacgcatacatt
ctggacttccagtaccccttctcagctgtgcaggcctttgcagttgccctggccaacgtg
actcagcgcctcaaatga
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integrated database retrieval system
