Sciurus carolinensis (gray squirrel): 124990299
Help
Entry
124990299 CDS
T08117
Name
(RefSeq) clathrin heavy chain 2 isoform X1
KO
K04646
clathrin heavy chain
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04142
Lysosome biogenesis
ncar04144
Endocytosis
ncar04721
Synaptic vesicle cycle
ncar04961
Endocrine and other factor-regulated calcium reabsorption
ncar05016
Huntington disease
ncar05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124990299
04142 Lysosome biogenesis
124990299
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
124990299
09156 Nervous system
04721 Synaptic vesicle cycle
124990299
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124990299
09164 Neurodegenerative disease
05016 Huntington disease
124990299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124990299
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124990299
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
124990299
Exosome [BR:
ncar04147
]
Exosomal proteins
Proteins found in most exosomes
124990299
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
NEW1_HB
capSnatchArena
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
124990299
NCBI-ProteinID:
XP_047416104
LinkDB
All DBs
Position
8:complement(122605078..122748710)
Genome browser
AA seq
1655 aa
AA seq
DB search
MAQILPIRFQEHFQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAHVVIIDMNDPMA
PIRRPITAESAIMNPASKVIALKAGKTLQIFNIEMKSKMKSHTMTEEVIFWKWISANTIA
LVTETMVYHWNMEGDSQPMKMFDRHAILAGCQMIHYRTDEFQKWLLLIGISAQQNRVVGA
MQLYSVEKKVSQPIEGHAAAFAEFKIEGNAKPTTLFCFAVRSSTGGKLHIIEVGQPAAGN
QPFVKKAVDVFFPPEAQTDFPVAMQIGAKHGVIYLITKYGYLHMYDLESGVCIYMNRISA
DTIFVTAPHEPTSGIIGVNKKGQVLSICVEEENIVNYATNVLQNPDLGLRLAVRSNLTGA
DELFVRKFSTFFAQGNYAEAAKVAASAPKGILRTSDTIQKFQSIPAQPGQASPLLQYFGI
LLDQGQLNKLESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTGDPILALSVYL
RANVPSKVVQCFAETGQFQKIVLYAKKVGYVPDWISLLRSVMRISPEQGLQFSQMLVQDE
EPLANINQIVDVFVENSLIQQCTSFLLDVLKHNHPAEGHLQTQLLEMNLIHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFSDLYDIKRTVVHTHLLNPEWLINFFGSLSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHLKYIQAACKTGQIKEVERICRESSCYNPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPAVVGGLLDVDCSEEVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNSPERFLRENAYY
DSSVVGQYCEKRDPHLACIAYERGQCDLELIQVCNENSLFKSEARYLVRRKDPKLWARVL
EETNPSRRHLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIASIAISSALYEEAFTIFYKFGVNAS
AIQVLIENIGNLDRAYEFAEKCNEPAVWSQLAQAQLQKDLVKEAIDSYIRADDPASYLEV
VQAANKSNNWEELVKFLQMARKNSQESYIETELIFALAKTSRLSELEDCINAPNNANIQQ
VGDRCYEEGMYEAAKLLYSNVSNFACLASTLVHLGEYQAAVDSSRKANNTQMWKEVCFAC
VDGQEFHLAQLCGLHIVIHADELEELIHYYQDRGYFEELISLLEAALGLERAHMGMFTEL
AILYSKFKPQKMPEHLELFWSRINIPKVLKAAEQAHLWAELVFLYDKYEEYDNAVLTMMN
HPTESWKEGQFKDFISKVTNLELYYRALQFYLDYKPLLINDLLLVLSPRLDHTRTVSFFS
KAGQLPLVKPYLRSVQSHNNKSVNEALNHLLTEEEDYQGLRASIDAYDNFDNISLAQQLE
KHQLIEFRRIAAYLYKGNNRWAQSVELCKKDHLYKDAMQYASESRDPELAEKLLQWFLEE
GKQECFAASLFTCYDLLHPDVVLELAWRHNLMDFAMPYFIQVMREYLNKILMGMNESQPI
ELSQQLMLTASSAGFPYGYAAAPAFIQPSVFSFSV
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctccctatccgcttccaggagcacttccagctccaaaacctaggaata
aatccagccaatattggatttagcacactgactatggaatctgacaagttcatatgtgtc
cgagagaaagtcggggagcaggcacatgtggtgattattgacatgaatgacccaatggca
cccatcagacgtcctatcacagcagagagtgccatcatgaatccagcttctaaggtgatc
gctctgaaagctgggaagactcttcagatctttaatattgagatgaagagtaaaatgaag
tctcatactatgacagaagaggtgatattttggaaatggatctctgcgaacactattgcc
ttggtgactgagaccatggtctatcactggaacatggaaggtgactcccagcccatgaag
atgtttgataggcatgctattctggctgggtgccagatgatccactaccgaactgatgaa
ttccagaagtggctgctccttataggcatctcagctcagcaaaaccgtgtggttggagca
atgcagctctattctgtggagaagaaggtttcacaacccatagaaggccatgctgctgct
tttgcagagttcaagatagaggggaatgccaagcctaccaccctcttctgctttgctgta
cgcagttccacaggaggaaagttgcacataattgaagttggacagcctgcagcaggaaac
cagccttttgtaaagaaagctgtagatgtgtttttccctccagaggcacagactgatttt
ccagtggctatgcagattggagctaaacatggtgtcatatatttgatcacaaagtatggc
tacctacatatgtatgatttagaatctggtgtgtgcatctacatgaaccgtattagtgct
gacacaatctttgtaactgctccacatgaaccaacctctgggattattggtgtcaacaaa
aagggacaggtgctgtcaatttgtgttgaggaagagaacattgtgaattatgcaaccaat
gtgcttcagaatccagacctgggtctgcgtttggctgttcgtagtaacctgactggggca
gacgagttgtttgtgagaaaattcagtaccttctttgcacaggggaactatgctgaagcc
gccaaagtagcagcatctgcaccaaagggaattctgcgtaccagtgatacaatccagaag
ttccaaagtatacccgcccagcctggccaagcctctcctttgctccagtactttggaatc
ctgcttgaccagggtcaactcaataaacttgaatctttggagctttgccggccagttctt
caacaagggcgcaagcaactcttagagaagtggctgaaagaagataagctagagtgttca
gaggaactgggagatttggtcaaaactggtgaccctatattggctctgagtgtgtacctt
cgagcaaatgtaccaagcaaagtggttcagtgttttgcagaaacaggccaattccagaaa
attgtactctatgccaaaaaggttggttatgtcccagactggatctctttgctgaggagt
gtgatgaggatcagtccagaacagggtctgcagttttcccaaatgctagtgcaggatgag
gagccattggccaacatcaaccagattgtggacgttttcgtggaaaacagtttaattcag
cagtgtacttccttcttgttggatgtcttaaagcataatcacccagctgagggacacctc
cagactcagctgttggaaatgaatctgatccatgcaccccaggtcgcagatgccatcctt
ggaaatcagatgtttacacattatgatcgggcccacattgcccagctttgtgagaaggca
ggcctcctgcagcgggcactagagcacttcagtgacctctatgacatcaagaggactgta
gtccacacccacctcctcaatcctgagtggctcatcaatttctttggctccttatcggtg
gaggattctgtggagtgtctacgtgccatgttgtctgctaacatcagacagaaccttcag
ctgtgtgtgcaagttgcttctaagtaccatgaacagctgggcacacagtccttggtggag
ctttttgaatccttcaagagttatgaaggcctcttctacttcctgggctcaattgtgaac
tttagccaagacccagatgtgcatttgaagtacattcaggctgcgtgcaagacagggcag
atcaaggaggtggagagaatatgccgtgagagcagctgctataacccagaacgggtgaag
aatttcctaaaggaggccaagctcacagaccagcttcccctcatcattgtgtgtgaccgc
tttgactttgtccatgacctcgtcctgtatttataccgcaacaacctgcagaagtacatt
gagatctatgttcagaaggtcaaccctagccgtctcccagctgtggttggagggctgctt
gatgtggattgttctgaagaagtaattaaaaatttaatcatggtggtgagaggacagttc
tctactgatgagctggtggctgaagtagaaaaaagaaacaggctcaagttgctgcttccc
tggctggaatctcggattcatgaaggctgtgaggagcctgccactcacaatgcactggct
aaaatctacattgacagcaacaacagcccggagcgctttttgagagagaatgcctactat
gacagcagtgtggtgggccaatattgtgagaaacgggacccacatctggcctgcattgcc
tatgagcgaggacaatgtgaccttgagctcatccaggtttgcaatgagaattctctgttc
aaaagtgaggctcgctacctggtacgcaggaaggatccaaagctatgggcccgtgtcctt
gaagagaccaacccttctaggagacacctaattgaccaggtagtacaaacagcattgtca
gaaacacaggatcctgaagaggtctcagtcactgtcaaagcctttatgacagctgaccta
cctaatgaattgattgaacttctggagaagattgttctggataattctgtcttcagtgag
cacaggaatctccagaatctgctgatcctgactgccatcaaggcagatcgcactcgggtt
atggagtacatcagccgtctggacaactatgacgcgccagacatcgcaagcattgccatc
agtagtgcactgtatgaggaggccttcaccatcttctacaagtttggtgtaaatgcctca
gcaatccaggtcctgattgagaacattggaaacctagaccgagcatatgagtttgcagaa
aaatgcaatgagcctgctgtgtggagtcagctggcccaagcacagcttcagaaggacctt
gtgaaggaagccattgactcctacatcagggcggatgaccctgcctcttatctggaagtt
gttcaggcagccaacaagagcaacaactgggaggagctagtgaaatttctgcagatggct
aggaaaaacagccaggagtcttatatagagactgaacttatttttgcattggctaaaacc
agccgtctatctgaactagaagattgcattaatgcacccaacaatgccaacattcagcag
gttggagaccgctgttatgaggaggggatgtatgaagctgccaaactgctgtatagcaat
gtttctaattttgcctgcctggcttccactttggtccacttgggtgagtatcaggcagca
gtggacagcagccgcaaggccaacaacacccagatgtggaaagaggtatgctttgcctgt
gtagatgggcaggagttccaccttgcacagctatgtggccttcacattgtcattcatgca
gatgagctggaggagttaatacactattaccaggatcgaggatacttcgaggagctcatc
tccctgctagaagcagccctgggcctggagagggcacacatgggcatgttcactgaactg
gccattctctattctaagttcaagccacagaagatgccagagcacctggagctcttctgg
tctcgcattaacatcccaaaggtgctgaaagccgcagagcaggcacacctctgggcagag
ctggtgttcctctatgacaagtatgaggaatatgacaatgctgtcctcaccatgatgaat
caccccactgagtcctggaaagaaggtcagttcaaggacttcatttccaaggtcaccaac
cttgagctctattacagagccctgcaattctatttggactataagcctctgctcattaat
gacttgctgctggtgttgtcaccccggctggaccacacccggactgtcagtttcttttcc
aaggcaggccagttgcccctagtgaagccttacttgcgttcagtccagagccacaacaac
aaaagtgtgaacgaagcactcaaccacctgctgactgaagaagaggattatcagggcttg
agggcatctatcgatgcctacgacaactttgacaacatcagcctggctcaacagctagag
aagcaccagctgatcgaattccggcgcattgcagcctatctttacaagggcaacaatcgg
tgggcccagagtgtggagctctgcaagaaggaccatctctacaaggatgccatgcagtat
gcctcagagtcacgtgatcctgagctggctgagaagttgctgcagtggttcctggaggaa
ggaaaacaggagtgttttgcggcctctctcttcacctgctatgacctgcttcatccagat
gtggtgcttgagctggcctggagacacaaccttatggactttgctatgccctacttcatt
caggtgatgagagagtaccttaacaaaattttgatgggcatgaatgagagccagccaatt
gagctaagccagcagctgatgctgacagcaagctctgctggcttcccctatggatatgca
gctgctcctgccttcatccagccttctgtgttcagcttcagtgtgtag
DBGET
integrated database retrieval system
