Sciurus carolinensis (gray squirrel): 124990314
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Entry
124990314 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124990314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124990314
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124990314
04121 Ubiquitin system [BR:
ncar04121
]
124990314
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124990314
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124990314
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124990314
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124990314
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124990314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
124990314
NCBI-ProteinID:
XP_047416157
LinkDB
All DBs
Position
8:19315136..19434452
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQMSNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKXPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQTARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLQPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSW
DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
STQIPLHRASWSPYPPPSNPSSFHSPPPGFQTAFRPPSKTPADLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaagtcctgatgctaaggaagaccctgtggaatgccctctttgcatggagccc
ttggagatagatgatatcaactttttcccttgcacctgtggctaccagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatggactttgtcctgcatgtagaaagccatat
ccagaagatccagcagtttataaaccactctcccaggaagaactgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatatcagaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtcccagcgccta
gctgacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccgagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagctatacagtgtgtcaacaatgtggtg
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaaacctgactgcatgtatctacatgaattgggagatgaggca
gcaagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaaacta
cttcaagaattatataaattaaatcccaattttcttcaattatctacgggttcagttgat
aaaaataagaacaaagtgacaccactgcagaggtacgatacccccattgataaaccttca
gattctctcagtatagggaatggtgataattcccagcagatgtctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtccccgtttgaaggggcagtaacagagtcacagtcattattctcagacaat
tttcgccatcccaaccctatcccaagtgggcttcctccttttcccagctccccacagaca
tctagtgactggcctacagcaccagagccacagagtctcttcacatcagaaacaatccca
gtatcatcctctacagactggcaagcagcatttggctttggttcttctaaancaccagag
gatgacttggggtttgatccctttgatgttactcgaaaagccttagcagacctgattgag
aaggaattgtccgtccaagaccaaccttccctttcacccacatctcttcagaactcctct
tcacacactacaaccgccaaaggtccaggctctggattcctgcatcctgctgcaccaaca
aatgccaactctcttaatagtaccttttcagtcttgccacaaaggttccctcaatttcag
cagcaccgagcagtttataattccttcagttttccaggccagacagcccgttatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctccagccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcttccccc
tccaacgccaaccacagtgcaccaacgtccaacactgccaccaccgacagcgtgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcatcttcagga
aacagtttagactctcttcaagacgacaatcctccacactggctaaaatcccttcaggcc
ctcacagaaatggacggccccagtgctgctccgtcgcagacccaccacagcgcccccttc
agcacacagatccccctgcacagagccagttggagcccctaccctcctccttcaaatcct
tccagcttccactccccaccccccggctttcagacggccttcagaccccccagcaaaacc
cccgcagatctactacagagttcaacactggaccgccactag
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