Sciurus carolinensis (gray squirrel): 124990339
Help
Entry
124990339 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncar03009
]
124990339
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124990339
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
Pre-60S particles
Helicases
124990339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124990339
NCBI-ProteinID:
XP_047416235
LinkDB
All DBs
Position
8:148089037..148104731
Genome browser
AA seq
675 aa
AA seq
DB search
MEVCKDRRVALAGELGPGRLREQRALGARRRRGRAGSGRCAEPAARGAPSLRPGGGACRR
KRKRSPVRGVPGGSGGAMEHVTEGSWGSLPVPLHPRVLGALRELGFPCMTPVQSATIPLF
MKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKRSQVGAIIITPTRELAIQIDEVLS
HFTKHFPQFSQILWIGGRNPGEDVERFRRQGGNIIVATPGRLEDMFRRKDEGLDLASCVR
SLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGXFSATQTQEVENLVRAGLRNPVRI
SVKEKGVAANSTQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYY
GKALEALVRNVKIMCIHGKMKNKRNKIFMEFRTLQSGILVCTDVMARGIDIPEVNWVLQY
DPPSSASAFVHRCGRTARIGHGGSALVFLLPMEESYVNFLAINQKCPLQEMKLQRNTVDL
LPRLRSMALADRAVFEKGMRAFVSCVQAYAKHECSLIFRLKDLDFASLARGFALLRMPRM
PELRGKQFPDFVPVDVNTDTIPFKDKAREKQRQKLLEQQRKEKTENEGRRKFIKNKAWSK
QKAKKERKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKFKKGKITEEEFEKGLLTSSK
RATTADLGISDLDDD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtgcaaggacagacgagtggcgctagccggggaactcggcccgggaagactt
cgggagcagcgcgcgctgggagcccgacggcgcaggggccgcgcgggcagcgggcgctgc
gccgagcccgccgcgcgcggagccccgtccctccgccccggaggcggagcctgccgccgg
aagcggaagcgctcgccggtgcggggcgttcccggcgggagcggcggggccatggagcac
gtgacggagggctcctggggctcgctgcccgtgccgctgcacccgcgggtgctgggcgcg
ctgcgggagctgggcttcccgtgcatgacgccggtgcagtctgcaaccatccctctgttc
atgaaaaacaaagatgttgctgcagaagcggtcacaggtagtggcaaaacactggccttt
gtcatccccatcctggaaattcttctgagaagggaagagaagttaaaaaggagtcaggtg
ggagccataatcatcacccccactcgagagctggccattcagattgatgaggtcctttcg
catttcacgaagcacttcccacagttcagccagattctttggattggaggcaggaaccct
ggagaagatgtcgagaggttcaggcgacaaggtggaaacatcattgtggcgaccccaggc
cgcctggaggacatgttccggaggaaggatgagggcttggacctggccagctgtgtgagg
tccctggaggtcctggtgctggacgaggcggacagacttctggacatggggtttgaagca
agcataaacaccattctggagtttttgccaaagcagagaagaacaggcnctttctctgcc
acacagacgcaggaggtggagaacttggtgagagcaggcctccggaaccccgtccgcatc
tcggtgaaggagaagggtgtggcggccaacagcacccagaagaccccctcccgcctggag
aactactacatggtgtgtaaggcagatgagaaatttaatcagctggtacattttcttcga
aatcataaacaggaaaaacacctagtcttcttcagcacctgcgcctgtgtggagtactat
gggaaggctctggaggccctggtgaggaacgtgaagataatgtgcattcatgggaagatg
aagaacaagcgcaataagatcttcatggagttccgcacgttgcagagtgggatcttggtg
tgcactgacgtgatggcacgcgggatcgacattcccgaagtgaactgggttttgcagtat
gaccctcccagcagcgccagtgccttcgtgcatcgctgtggccgcacagcccgcattggc
catgggggcagcgcgctggtgtttctcctgcccatggaagagtcctacgtcaatttcctg
gcgattaaccaaaaatgtcccctgcaggagatgaaactccagaggaacactgtggacctg
ctgccgagactcaggtccatggccctggctgacagagctgtgtttgagaagggcatgaga
gctttcgtgtcctgcgtccaggcctacgcgaagcacgagtgcagcctcatcttcaggctg
aaggatcttgattttgctagtcttgctcgaggtttcgccctgctgaggatgcccaggatg
ccagaactcagaggaaaacagtttccggattttgtgcctgtggacgttaataccgacacg
attccatttaaagataaggctagagaaaagcagaggcagaaactactggagcaacaaaga
aaagagaaaacggaaaatgaagggagaagaaaattcattaaaaataaagcttggtcgaag
cagaaggccaaaaaggaaaggaagaaaaagatgaatgaaaaaaggaaaagggaagagggt
tctgatattgaagatgaggacatggaggaacttcttaatgacacaaggctcttgaaaaag
tttaagaaaggcaaaattactgaagaagaatttgagaagggcttgttgacaagtagcaaa
agagccacaacagcagatctggggatctcagatttggatgatgactga
DBGET
integrated database retrieval system
