Sciurus carolinensis (gray squirrel): 124990357
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Entry
124990357 CDS
T08117
Name
(RefSeq) tRNA pseudouridine synthase A isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124990357
Enzymes [BR:
ncar01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
124990357
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
124990357
Prokaryotic type
124990357
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-GeneID:
124990357
NCBI-ProteinID:
XP_047416275
LinkDB
All DBs
Position
8:142670565..142682461
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AA seq
425 aa
AA seq
DB search
MGVLGLRAALRRVWGRGPARPGPRAPGLPTMAGKEAPPARAAHQQDRKARGGWIWEDTQH
PSKRLRGSEDEEQPRKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRAG
CIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLK
RVTGGFNSKNKCDARTYFYMLPTFAFAHKDRDVQDETYRLSTETLQQVNRLLACYKGTHN
FHNFTSQKGPREPSARRYILDMYCEQPFLREGLEFAVIKVKGQSFMMHQIRKMVGLVVAI
VKGYAPESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWAQEEGK
VAAFKEQHIYPTIVSTERDERSMAQWLSTLPVHDFSATALAAARPGAKVPSPLDGSEGDG
DGDTD
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcctgggcctgcgggccgcgctgcggagagtctggggacgggggccggcgcgc
cccggcccgcgcgcgcccggcctgcccactatggccgggaaggaggcgcccccagcacgg
gccgcacaccagcaggacagaaaggcccgaggtggctggatttgggaggacacgcagcac
ccgtccaagaggctcaggggcagcgaggacgaggagcagccgagaaaactgcccaagcgc
aagattgtactgctcatggcctactcagggaagggctaccacggcatgcagaggaatgtg
ggatcctcacaattcaagacaatcgaggacgacctggtgtctgccctggtccgggcaggc
tgcatccctgagaatcacggtgaagacatgaggaaaatgtccttccagcgctgtgcccgc
acggacaagggtgtgtctgcagctggccaggtagtgtccctgaaggtgtggctgatcgac
gacattctagacaagatcaacagccaccttccctcccacatccggattctggggctgaag
cgggtcacgggtgggttcaactccaagaacaagtgcgacgccaggacttacttctacatg
ctgcccaccttcgcctttgcccacaaggaccgagatgtgcaggacgagacctaccgcctg
agcacagagaccctgcagcaggtcaacaggctcctggcctgctacaagggcacccacaac
ttccacaacttcacctcgcagaaggggcccagggagcccagcgcccggcgctacatcctg
gacatgtactgcgagcagcccttcctgcgcgagggtctggagttcgcagtcatcaaggtg
aagggccagagcttcatgatgcaccagattcggaagatggtgggcctggtggtggccatt
gtgaagggctatgcccccgagagcgtcttggagcgcagctggggggaggagaaggtggac
gtgcccaaggccccggggctgggcctggtcctggagagggtgcactttgagaagtacaac
cagcgctttggcggcgacgggctgcacgagcccttggactgggcgcaggaggaggggaag
gtggcggccttcaaagagcagcacatctaccccaccatcgtcagcacggagcgggacgag
cggtccatggcccagtggctgagcaccttgcccgtccacgacttcagtgccactgcgctt
gcggcggcccgcccaggcgccaaggtccccagtcccctggatggcagcgaaggggatggg
gacggagacactgactga
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