Sciurus carolinensis (gray squirrel): 124990682
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Entry
124990682 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: protein strawberry notch homolog 1-like
KO
K26273
protein strawberry notch
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124990682
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124990682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124990682
NCBI-ProteinID:
XP_047416887
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All DBs
Position
8:complement(147883193..147939298)
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AA seq
1392 aa
AA seq
DB search
MVEPGQDLLLAALSESGISPNDLFDIDGGDAGLATPTPTTPVQQSVPLSALELGLETEAA
VPVKQESETVPTPALLNVRQPPSTTTFVLNQINQLPTLGSTIVMTKTPPVTTNRQTITLT
KFIQTTANTRPSVSAPVVRNAMTSAPSKEQVQLKDLLKNNSLNELMKLKPPANIAQPVAT
AATDVSNGTVKKESSNKEVARIWINDMKMRSFSPTLKVPVVKEEDEPEEEDEEEMGHAET
YAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYKTSISEETIDNGWLSALQLEAVTYA
AQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIYENYLLSRKRALWFSVSNDLKYDAER
DLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLKQL
LHWCGDDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATGASE
PRNMAYMNRLGIWGEGTPFREFSDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFTGV
TFKIEEVLLSQSYVKMYNKAVKLWVIARERFQQAADLIDAEQRMKKSMWGQFWSAHQRFF
KYLCIASKVKRVVQLAREEIKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAKGVL
QSLIEKHFPAPDRKKLYSLLGIDLTAPSNNSSPRDSPCKESKXKKRKGEEIAREAKKARK
VGGLTGSSSDESGSESDASDNEESDYESSKNMSSGDDDDFNPFRDESSEDDEDDPWLIRK
DHKKNKDKKKKKSIDPDSIQSALLASGLGSKRPSFSSTPVISPAPNSAPANSNTNSNSSL
ITSQDAVERAQQMKKDLLDKLEKLAEDLPPNTLDELIDELGGPENVAEMTGRKGRVVSND
DGSISYESRSELDVPVEILNITEKQRFMDGDKNIAIISEAASSGISLQADRRAKNQRRRV
HMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTH
GDRRATESRDLSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPPPDYPGEFFKDVRQGLIG
VGLINVEDRSGILTLDKDYNNIGKFLNRILGMEVHQQNALFQYFADTLTAVVQNAKKNGR
YDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEATKIWAELTGP
DDGFYLSLQIRNNKKTAILVKEVNPKKKLFLVYRPNTGKQLKLEIYADLKKKYKKVVSDD
ALVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGV
LASVSGTNVKMQIVRLRTEDGQRIVGLIIPANCVSPLVNLLSTSDQSQQLAVQQKQLWQQ
HHPQSIANLSNA
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaccagggcaagatttactgctcgctgctttgagtgagagtggaattagtcca
aatgacctcttcgatattgatggtggagatgctgggcttgcaaccccaacgcctaccact
ccagttcagcagtcggtgccacttagtgcattagaactaggtttggagacggaagcagca
gttcctgttaaacaagaatcagagacggtacctactcccgcactgttaaatgtgaggcag
cctccatctactacaacgtttgtgttgaatcagataaatcagcttccaaccttgggatct
acaattgtaatgactaaaacaccacctgttacaaccaatcggcaaaccatcactttaaca
aagtttatccagactaccgcaaatacacgcccttcagtctcagcaccagtagtacgaaat
gccatgacctctgcaccttcaaaagagcaggttcaactgaaggatctactcaaaaataat
agtctcaatgaacttatgaaactgaaaccacctgctaatatcgctcaaccagttgcaaca
gcagctactgacgtgagtaatggtacagtgaagaaagagtcttctaataaagaagtagca
agaatttggataaatgacatgaagatgaggagtttttccccaaccttgaaggttcctgtt
gtaaaagaggaggatgaaccagaggaagaagatgaagaagaaatgggtcatgcagaaacc
tatgccgagtatatgccaataaaattgaaaattggcctacgtcacccagatgctgtagtg
gaaactagctctttatccagtgttactcctcctgatgtttggtacaaaacatcaatctct
gaagagaccattgataatggttggttatcagctttacagcttgaagcagttacatatgca
gcccagcaacatgagacattccttcctaatggagatcgagctggcttcctaataggtgat
ggtgctggtgtgggaaaaggcagaacgatagcaggaatcatctatgaaaattacttgttg
agtagaaaaagagcattatggtttagtgtttcaaatgatttaaagtatgatgctgaaaga
gatttgagggatattggagcaaaaaacattttggttcattcattaaataagtttaagtat
gggaaaatttcatccaaacataatgggagtgtgaaaaagggtgttattttcgctacctat
tcttcccttattggtgaaagccagtctggtggtaaatataaaacgaggttgaaacagctt
ctgcattggtgtggtgacgacttcgatggagtgatagtttttgatgaatgtcataaagca
aaaaacctttgtcctgttggttcttcaaaaccaaccaagacaggcttagcagttttagag
cttcaaaacaaattgccaaaagccagagttgtttatgctagtgccactggtgcttctgaa
ccacgcaacatggcctatatgaaccgtcttggaatatggggcgagggaactccatttaga
gaattcagtgattttattcaagcagtggaacgcagaggggttggtgccatggaaattgtt
gctatggatatgaagcttagaggaatgtacattgcccgacagctgagctttactggagtg
accttcaaaattgaggaagttcttctttctcagagctatgttaaaatgtacaacaaagca
gtcaaactgtgggtcattgccagagagcgatttcagcaagctgcggatctgattgatgct
gaacaacgaatgaagaagtccatgtggggtcagttctggtccgctcaccagagatttttc
aaatacttgtgcatagcatccaaagttaaaagggttgtgcaactagctcgggaggaaatc
aagaatggaaaatgtgtcgtaattggtctgcagtctacaggagaagctagaactttggaa
gccttggaagagggcggaggagaattgaatgattttgtttcaactgccaaaggagtcctg
cagtcactcattgaaaaacacttccctgctccggatagaaagaaactttatagcttgctg
ggaattgatctgacagctccaagtaataacagctcaccaagagatagtccttgtaaagaa
agtaaantaaagaagcggaaaggtgaagaaatagctcgagaagccaaaaaagcacgaaaa
gtcggtggccttactggtagcagttctgatgagagtgggagtgagtctgatgcctctgac
aatgaagaaagtgactacgagagctctaaaaacatgagctctggagatgacgacgatttc
aatccatttagagacgagtctagtgaggatgatgaggatgatccctggttaatcagaaaa
gatcacaagaaaaacaaagataagaaaaagaagaagagtatagatccagattctattcaa
agtgccttattagcatcaggtcttggatcaaaacgacctagtttttcatctacaccagtt
atctcacctgctcctaacagtgcaccagctaacagtaacaccaacagtaacagtagcctc
ataactagtcaggacgctgtggaaagggcccaacagatgaagaaagacctactggataaa
ttagaaaagctagctgaagacctgcctcctaatactctggatgaacttatcgatgaactt
ggtggtccagagaacgttgctgagatgactggccgcaagggtcgggttgtgagcaatgat
gatggaagcatatcttatgagtcaagatctgaacttgatgtgcctgtggagatactaaat
atcacagaaaaacaaagatttatggatggagataagaatattgctatcatctcagaagct
gccagctcaggtatttcattacaagcagatcggagagccaaaaatcaaaggcgaagagtt
catatgactttggagttaccctggagtgctgatagagcaattcaacaatttggaagaact
catagatcaaatcaagttactgctcccgagtacgtctttttgatttctgagttggcagga
gaacaaagatttgcatctattgttgctaaaagacttgagagtttgggggcccttacacat
ggtgacaggcgagcaacagaatctagggacctgagcaggttcaactttgataataagtat
ggaagaaatgctttagaaattgttatgaaatccattgtaaatttggactctcctatggta
tcaccacctccagactatcccggagaattctttaaagatgttcgacaaggactgatagga
gtcggcctgatcaatgtagaagatcgctcgggaattcttactcttgataaagattataat
aacataggaaaattcttaaatagaattctgggcatggaggtgcatcaacagaatgcattg
tttcagtattttgcggacacacttactgcagttgttcaaaatgccaaaaaaaatggaaga
tatgatatgggaatcctagatcttggttctggagatgaaaaggtgaggaaaagtgatgtt
aagaagtttctgacgccaggatattcaacctctggccacgtcgaattatacacgataagt
gtagagagaggaatgtcctgggaggaagcaaccaaaatttgggcggagctgacaggacca
gatgatggcttttacttatcactgcaaataaggaacaacaagaaaacggcaatcttagtt
aaagaagtaaaccctaaaaagaaacttttcttggtttatcgaccaaataccgggaaacag
ctcaaattagaaatttatgctgacttaaaaaagaaatataagaaggtagtctcagatgat
gccctggtgcactggttagatcagtataattcatctgcagatacctgtactcatgcttac
tggcgtggcaattgcaaaaaagcaagtttgggattagtttgtgaaattggtcttcgctgc
cgcacatattatgtattatgtggttcagtacttagcgtgtggacaaaagttgaaggtgtt
ctcgcatccgtcagtggcacaaatgtgaaaatgcaaatagttcggttaagaacagaagac
ggacaacggattgtaggtttaatcattccggcaaattgtgtatctcctcttgtaaatctc
ctgtcaacttcagaccagtctcaacagcttgcagtccaacaaaaacagttatggcagcag
catcacccacagagcatcgccaacttgagcaacgcataa
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