Sciurus carolinensis (gray squirrel): 124990820
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Entry
124990820 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-binding cassette sub-family B member 5-like
KO
K05660
ATP-binding cassette, subfamily B (MDR/TAP), member 5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124990820
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124990820
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
124990820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
DEAD
AAA_22
AAA_16
AAA
AAA_30
RsgA_GTPase
AAA_5
AAA_21
Zeta_toxin
AAA_29
DUF2207_C
AAA_33
G-alpha
DUF87
AAA_28
AAA_18
Motif
Other DBs
NCBI-GeneID:
124990820
NCBI-ProteinID:
XP_047417198
LinkDB
All DBs
Position
8:80631498..80777586
Genome browser
AA seq
1150 aa
AA seq
DB search
MQENFQRNGTLQEQLPKTRKQAVGAIEIFRFADGLDIMLMVLGILASLVNGACLPLMSLV
LGEVSDHLISGCLVQTNTRNSQNCTQSQEKLNEEVTMLTLYYVGIGATALIFGYKQISFW
VMAAARQTKRIRKQFFHSVLAQDIGWFDSCDIGELNTRMTDDISKISDGIGDKIALLFQN
MSTFSIGLAIGLVKGWKLTLVTLSTSPLIMASAAVCSRVFFSVIHSSYCIGAAAPHFETF
SIARGAAFNVFQVIDKKPSIDNFSTAGYKPECIEGTVEFKNVSFNYPSRPSIKILKGLNL
KIKSGETVALVGPSGSGKSTAVRLLQRLYDPGHGFITVDANDLRALNVRHYQEHIGVVSQ
EPVLFGTTIRNNIRYGRDGVTDEEIERAAKEANAYDFIMEFPNKFNTLVGEKGAQMSGGQ
KQRIAIARALVRNPKILILDEATSALDTESESIVQAALEKASKGRTTIVVAHRLSTVRSA
DLIVTLKDGMVVEKGTHAELMAQQGLYYSLAMSQDIKKADEQMELMTYSPERNTSPVSPC
AMNNIKSDGTDKSEESIQHKETSLPEVSLLKIFELNKSEWTFVILGTLASVLNGTVHPIF
SIIFAKIITKXMFEGDNKTTLKHNAEIYSMIFVILGIICFVSYFMQGLFYGRVGEILTMR
LRHLAFKAMLYQDIAWFDDKENSTGALTTTLAIDIAQIQGATSARVGVLMQNATNMGLSV
IISLVYGWEMTLLILSVAPVLALTGMIETAAMTGFANKDKQELKRAGKIAIEAVENIHTI
VSLTREKVFEQTYEETLQTQHRNTLKKAQIIGSCYAFSHAFVYFAYAAAFPFGAYLVQVG
RMTPEGMFIVFTAIAYGAIAMGETLVLVPEYSKAKSGAAHLFALLEKKPTIDSHSQRGKK
PDTCEGNLEFQEVSFFYPCRPDVFILRGLSLSIEKGKTVAFVGSSGCRKSTSVQLLQRFY
DPVKGQVLFDGVDAKELNVQWLRSQIAIVSQEPMLFNCSIAENIAYGDNSRVVPLDEIKE
VANAANIHSFIEGLPEKYNTQVGLKGAQLSGGQKQRLAIARALLRKPKILLLDEATSALD
NESEKVVQHALDKARKGRTCLVVAHRLSTIQNADLIVVLHNGKIKERGTHQELLRNRDIY
FKLVNAQSVH
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaatttccagagaaatggaacactacaagaacaactgcctaaaacaagaaag
caagctgttggagctattgagatattccgctttgctgacgggctggacatcatgctcatg
gtcctgggaatactggcatcactggtaaacggagcctgtcttcccttaatgtcactggtt
ttaggagaagtgagtgatcaccttattagtggatgtctagtccaaactaacacaagaaat
tctcagaactgtactcagtctcaagagaagctgaatgaagaagtgactatgttgactctg
tattatgttggaataggagctactgccttgatttttggctacaagcagatttccttttgg
gtgatggctgcagcacggcagaccaagagaattcgaaagcagtttttccattcggttttg
gcgcaggacatcggttggtttgacagctgtgatatcggggaacttaacactcgcatgact
gatgacatcagcaaaatcagtgatggcatcggggacaagattgctctgttgtttcaaaat
atgtctactttttccattggcctggcaattggcttggtaaagggctggaaactgactctg
gtgactctatccacatctcctcttatcatggcttcagcggcagtgtgctctcgggtattc
tttagtgtgatccacagtagttactgcatcggagcagcagcccctcactttgaaaccttc
tctatagcccgaggagctgcctttaatgttttccaggttattgataagaaacccagcata
gataacttttcaacagctggatataaacctgaatgcatagaaggaactgtggaatttaaa
aatgtttctttcaattatccatcaagaccatctatcaagattctgaaaggtctgaatctc
aaaattaagtctggagagacagtagccttggttggccccagtggtagtggcaagagcaca
gcagtccggcttctgcagaggttatatgaccctggtcatggctttatcacagtggatgcg
aatgacctcagagccctgaatgtgcggcattaccaagaacacattggagtggtcagccag
gagcctgtgctgtttggaaccaccatcaggaacaatattagatatggacgagatggtgta
actgatgaagagattgagagagcagcgaaggaagcaaatgcttatgacttcataatggag
tttcctaataaattcaacacattggtaggagaaaaaggagcccagatgagtggaggacag
aaacagagaattgccattgctcgagctttagttcgaaaccccaaaattctgatcttagac
gaggctacatctgctctggatacagaaagcgaatcaattgttcaagctgcactggagaag
gccagcaaaggtcgcactacaattgtggtagcacaccgactttcaactgttcgaagtgca
gatctgattgtgactctaaaggatgggatggtagtggaaaaaggaacccatgctgagcta
atggcacagcaaggtctatattattcacttgccatgtcacaggatattaaaaaagctgat
gaacagatggagttaatgacatattctcctgaaagaaacaccagccctgtttctccatgt
gctatgaataacatcaagtcagatggtactgacaagtctgaggaatccatccaacataag
gagacaagtcttcctgaagtgtctctattaaaaatatttgaattaaacaaatctgaatgg
acttttgtgattctggggacattggcttctgttctgaatggaactgttcatccaatattt
tccatcatctttgctaaaatcataactaagtaaatgtttgaaggtgataataaaacaaca
ttaaagcacaatgcagaaatctattccatgatatttgtcattctgggcattatttgcttt
gtcagttacttcatgcagggactgttttatggcagagtaggagaaattttaaccatgaga
ttaagacacttggcattcaaagccatgttatatcaggatattgcctggtttgatgataag
gaaaacagcacaggagccttgacaacaacattagccatagatatagcacaaattcaaggg
gcaacaagtgcaagggtcggtgtcttaatgcagaatgcaaccaacatgggactgtccgtt
atcatttcccttgtatatggatgggagatgacactcttaattctgagtgttgctccagta
cttgctctaacaggaatgattgaaaccgcagcaatgactggatttgccaacaaggataag
caagaacttaagcgtgcaggaaagatagcaattgaagctgtggagaacattcatactata
gtgtcattaacaagagagaaagtctttgagcaaacatatgaagagactcttcagacccaa
cacagaaataccttgaagaaagcacaaatcataggaagctgctatgcattcagccatgcc
tttgtgtattttgcctatgcagcagcatttccatttggagcctatttagttcaagttgga
cgaatgacaccagagggcatgttcatagttttcactgcaattgcatatggagctattgcc
atgggagagacacttgttttggtacctgaatattcgaaggccaaatctggggctgctcat
ctgttcgccttgttggaaaagaaaccaaccatagatagtcacagtcaaagagggaaaaag
ccagacacatgtgaagggaacttagagtttcaagaagtctctttcttctatccatgtcgc
ccagatgttttcatccttcgcggcctatccctcagtattgagaaagggaagacagtagca
ttcgttggcagcagcggctgtaggaaaagcacttctgttcaacttctgcagcgattttat
gaccctgtgaaaggacaagtgttatttgatggtgtagatgcaaaagaattgaatgtacag
tggctccgttcccaaatagctatagtttctcaagagcctatgctcttcaactgtagcatt
gctgagaacattgcctatggtgataacagccgtgttgtgccattagatgagataaaagaa
gttgcaaatgcagcaaatatccattctttcattgaaggtctccctgagaaatacaacaca
caagttggactgaaaggagcacagctttctggtggccagaaacaaagactagccattgca
agggctcttctccgaaaaccaaaaattttattgttggatgaggccacttcagcccttgac
aatgagagtgaaaaggtggttcagcatgcacttgataaagcccggaaagggaggacatgt
ctagtggtggctcacagactctccacaatacagaatgcagatctgatagtggttctgcac
aatggaaaaataaaggaaaggggaactcatcaggagctcctgagaaatcgagacatatac
tttaaattagtaaatgcacagtcagtgcactga
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integrated database retrieval system
