Sciurus carolinensis (gray squirrel): 124990900
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Entry
124990900 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: ataxin-2-like
KO
K23625
ataxin 2/2L
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05014
Amyotrophic lateral sclerosis
ncar05017
Spinocerebellar ataxia
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124990900
05017 Spinocerebellar ataxia
124990900
05022 Pathways of neurodegeneration - multiple diseases
124990900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124990900
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124990900
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
124990900
NCBI-ProteinID:
XP_047417377
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All DBs
Position
8:145200268..145315715
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AA seq
1162 aa
AA seq
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MSLKPQPQQQQQPPAAASARKPGGGGLLTSPAAAPPSSSSVSASSAAASSSSSAAAAGAG
GGRPGLGRGRNNSKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKT
YSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFTDS
AISAKVNGEHKEKDLEPWDAGELSTSEELEALENDVSNGWDPNDMFRYNEENYGVVSTYD
SSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQR
NSSEREGHSINTREGKXYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDF
NPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRP
PSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPP
SEATTPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGII
PAEAVAMPIPSASPTPASPASNRAVTPSMEAKDSRLQDQRQNSPAGNKENVKPNETSPSF
SKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSSESVDQLLNKNREGEKSRDLIKDKI
EPSAKDSFIENSSSNCTSGSSKPNSPSISPSVLNNTEHKRGPEVTSQGVQTSSPACKQEK
DDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPTP
VYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDQHHQSTM
MHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARM
VAPPAHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHP
NTTLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSALYHA
GLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQCASEALAR
CGLEIGHSWSSLSECYLAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPV
STTAHFPYMTHPSVQAHHQQQL
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagccccagccacagcagcagcagcagcctcccgcggccgccagtgcccgc
aagcccggaggcggcggccttctcacgtcgcccgctgccgcgccgccgtcctcgtcctca
gtctcggcgtcctcggccgcggcttcctcctcctcctccgctgccgcagccggcgcaggc
ggcgggcggccgggcctgggcagaggtcgaaacaatagcaaaggactgcctcagtctacg
atttcttttgatggaatctatgcaaatatgaggatggttcatatacttacatcagttgtt
ggatccaaatgtgaagtacaagtgaaaaatggaggtatatatgaaggagtttttaaaaca
tacagtcctaagtgtgatttggtacttgatgctgcacatgagaaaagtacagaatccagt
tcgggaccaaaacgtgaagaaataatggagagtattttgttcaagtgttcagattttgtt
gtggtacagtttaaagatatggactccagttatgcaagaagagacgcttttaccgactct
gctatcagtgctaaagtgaatggtgaacacaaggagaaggacctggagccctgggatgca
ggtgaactctcaaccagtgaggaactggaggctttggaaaatgacgtgtctaatggatgg
gatcccaatgatatgtttcgatataatgaagaaaattatggagtagtgtctacatatgat
agcagtttatcttcatatacggtgcccttggaaagggacaactcagaagaatttttaaaa
cgggaagcaagggcaaaccagttagcagaagaaattgaatcaagtgctcagtacaaagct
cgggtggccctggaaaatgatgatagaagtgaggaagaaaaatatacagcagttcagaga
aattccagtgaacgtgaggggcacagcataaacactagagagggaaaataatatattcct
cctggacaaagaaatagagaagtcatatcctggggaagtgggagacagaattcaccgcgt
atgggccagcctggatcaggctccatgccatcaagatccacttctcacacttcagatttc
aacccgaattctggttcagaccaaagagtagttaatggaggtgttccctggccatcgcct
tgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactctcttcca
cctcgggcagccacccctacacggccgccctccaggcccccctcgcggccatccagaccc
ccgtctcacccctctgctcatggttctccagctcctgtctctactatgcctaaacgcatg
tcttcagaagggcctccaaggatgtccccaaaggcccagcgacaccctcgaaatcaccga
gtttctgctgggaggggctctatatctagtggcctagaatttgtatcccacaatccacca
agtgaagcaactactcctccagtggcaaggaccagtcctgcagggggaacgtggtcatca
gtggtcagtggtgttccaagattatctcccaaaactcacagacccaggtctcccagacag
aacagtattggaaatactcccagtgggccagtgcttgcttctccccaagctggtatcatc
ccagctgaggctgtcgccatgcccattccatcagcatctcctacacctgctagtcctgca
tccaacagagctgtgaccccatcaatggaggctaaagattccaggcttcaagatcagagg
cagaactctcctgcaggaaataaagaaaatgttaagcccaatgaaacatcacctagcttt
tcaaaagctgaaaataaaggaatatcaccagttgtttctgaacatagaaaacaaattgat
gatttaaagaagtttaagaatgattttaggttacagccaagttcttctgaatctgtggat
caactactaaacaaaaatagagagggagaaaaatcaagagatttgatcaaagacaaaatt
gaaccaagtgctaaggattctttcattgaaaatagcagcagcaactgcaccagtggcagc
agcaagccgaacagtcccagcatctccccttcagtacttaataacacggagcacaagagg
gggcctgaggttacgtcccaaggggttcaaacttctagcccagcatgtaaacaagagaag
gatgataaagaggagaagaaagatgcagctgagcaagttaggaaatcaacactgaatccc
aatgcaaaggagttcaaccctcgctccttttctcagccaaagccttctacaaccccaact
tctcctcggcctcaagcacaacctagtccatctatggtgggtcaccaacaaccaactcca
gtttatactcagcctgtttgttttgcaccaaatatgatgtatccggtcccagtgagccca
ggcgtgcaacctttatacccaatacctatgacgcccatgccagtgaatcaagccaagaca
tatagagcagtaccaaatatgccccaacagcggcaagaccagcatcatcagagcaccatg
atgcacccagcctctgcagcaggcccgcccatcgtagccaccccaccagcttactccact
cagtatgttgcctatagtcctcagcagtttccaaatcagccactagttcagcatgtgcca
cattatcagtctcagcatcctcatgtttatagtcctgtaatacagggtaatgctcgaatg
gtggcaccaccagcacatgcccagcctggtttagtgtcctcttccgcaacccagtacggg
gctcacgagcagacacacgcaatgtacgcatgccccaaattaccatacaacaaggagaca
agcccttctttctactttgccatttccacgggctcccttgctcagcagtatgctcaccct
aacactaccctgcacccacatactccacatcctcagccttcagctacccccaccggacag
caacaaagccaacatggtggaagtcatcctgcacccagtcctgttcagcaccatcagcac
caggccgcccaggctctccatctggccagtccacagcaacagtcagccctttaccacgcg
gggctcgcaccaaccccaccttccatgacacctgcctccaatacgcagtcgccacagaat
agtttcccagcagcacaacagaccgtctttacaatccatccttctcatgttcagccggca
tataccaatccaccccacatggcccatgtacctcagtgtgccagtgaggctctggcaagg
tgtgggctagagatcggacacagttggagctctctctcagaatgctaccttgctcatgta
cagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgctaatgacgaca
cagccacccggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtc
tcgacaacagcgcatttcccctatatgacgcacccttcagtacaagcccaccaccaacag
cagttgtaa
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