Sciurus carolinensis (gray squirrel): 124990946
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Entry
124990946 CDS
T08117
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04621
NOD-like receptor signaling pathway
ncar05132
Salmonella infection
ncar05133
Pertussis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124990946
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124990946
05133 Pertussis
124990946
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ncar04054
]
124990946
Pattern recognition receptors [BR:
ncar04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124990946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
CARD
NLRC4_HD2
LRR_4
NOD2_WH
AAA_16
AAA_22
RsgA_GTPase
CRS1_YhbY
PIF1
ABC_tran
AAA_25
AAA_18
Pam16
Motif
Other DBs
NCBI-GeneID:
124990946
NCBI-ProteinID:
XP_047417470
EnsemblRapid:
ENSSCRG00010014127
LinkDB
All DBs
Position
8:complement(89350676..89398452)
Genome browser
AA seq
953 aa
AA seq
DB search
METQEHSERKVIPAGSDSHIKLLKFNRELLVTHIRNTQCLLDNLLENDYFSAEDAEIVGA
CPTQPDKVRKLLDLVQSKGEEVSEFFLYVLQQLADAYVDLRPWLSEICFSPSQLIQSKVI
VNTDPVSRYTQKLRHQLGCDSKFMLCYAQKEELLLEETYMDTTMELVSFSNESLGSLGSL
SCLLDHSSGVLNEHGETIFVFGDAGVGKSMLLQRLQSLWASGRLDVGVKFFFHFRCRMFS
CFKESDTLCLQDLLFKHFCYPEQDPDEVFSFLLRFPHVALFTFDGLDELHSDFDLSRVPD
SCCPWDPAHPLVLLANLLSGRLLKGASKLLTARTGVEVPRQLLRKKVLLRGFSPSHLQTY
ARKMFPERPAQDRLLQQLEANPNLCSLCAVPLFCWIIFRCFQHFHTTFESSPQLPDCTVT
LTDVFLLVTEVHLNRTQPSSLVQRNTRSPAETFSAAWRTLRSLGQVAHHGMERSLFVFTQ
TEVQASELQEGDLQLGFLRAVPELAPEGGQQSYEFFHITLQAFFTAFFLVVDNKVGHREL
LRFFQEWAPPGEAAGESCYPPFFPFQCLGGRSLARSDPFKNKDHFQFTNLFLCGLLSKAR
QKLLQHLVPAATLRRKRKALWSHLFASLRAYLKSLPRVQSGGFSQVQAMPTFLWMLRCIY
ETQSQKVGQLAAKGICANYLKLTFCNACSADCSALSFVLHHFRKRLALDLDNNNLNDYGV
RELQPCFSRLTVIRLSVNQITDSGVKVLCEELTKYKILTYLGLYNNQITDVGARYIAQIL
DECKALTHLKLGKNKITSEGGKCLALAMKNSTSISEIGMWGNQIGDEGAKAFAEALRNHP
SLTNLSLASNGISTEGGKSLARALQQNTSLKIFWLTKNELNDEVAESFAEMLKVNQTLKH
LWLIQNQITATGTAQLAEALQNNTGITEICLNGNLIKPEEAKVFEDEKRIICF
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcaggagcacagtgagaggaaagtcatcccagctggttctgactcccacatt
aaattgttgaagttcaaccgggaacttctggtcactcacatccgtaacactcagtgtctg
ctggacaacttgctggagaatgactacttctcagcagaggacgcggagatcgtgggtgcc
tgccccacccaacctgacaaggtccgaaaacttctggacctggtccagagcaagggtgag
gaggtttctgagttcttcctctacgtgctccagcaactcgcagatgcttacgtggacctc
aggccgtggctgtcggagatctgcttctccccttcccagctcattcagagcaaagttatt
gtcaacaccgacccagtgagcaggtacacccagaagctccggcaccaactgggctgtgac
tccaagttcatgctgtgttacgcccagaaagaggagctgctgctggaggagacctacatg
gacaccaccatggagctggtgagcttcagcaacgagagcctgggcagcctgggcagcctg
tcctgcctcctggaccacagctcgggcgtcctcaacgagcacggggagaccatcttcgta
ttcggggacgcgggtgtaggcaaatccatgctgctgcagcggctgcagagcctctgggcc
tcaggccggctggacgtgggggtcaagttcttcttccacttccgctgccgcatgttcagc
tgcttcaaggagagcgacacgctgtgccttcaggatctgcttttcaagcatttctgctac
ccggagcaggaccctgacgaggtgttctcttttctgctgcgctttccccacgtggccctc
ttcaccttcgatggcctggacgagctgcactcggacttcgacctgagccgcgtgcctgac
agctgctgcccctgggatcccgcccacccgctggtcctgctggccaacctgctcagcggg
aggctgctcaagggcgccagcaagctgctcacagcccgcacaggggtcgaggtgccacgc
cagctcctgcggaagaaggtgcttctccggggcttttcccccagccatctgcagacgtat
gcccggaagatgttccccgagcgccctgcgcaggaccgcctgctgcagcagctggaggcc
aaccccaacctctgcagcttgtgcgccgtgcccctcttctgctggatcatcttccggtgc
ttccagcacttccacaccaccttcgaaagctccccgcagcttcccgactgcacggtgacc
ctgaccgacgtcttcctgctggtcaccgaggtccacctgaacaggactcagcccagcagc
ctggtgcagcgcaacacgcgcagccccgccgagaccttcagcgccgcctggcgcacactg
cgctcgctgggacaggtggcccaccacggcatggagaggagcctcttcgtgttcacccag
acggaggtgcaggcctctgagctgcaggagggggacctgcagctgggcttcctgcgggcc
gtgccagaactggcccctgaagggggacagcagtcttatgagtttttccacatcactctc
caggccttctttaccgccttctttcttgtggtggacaacaaggtgggacaccgggagctg
ctcaggttctttcaggagtgggcacctcctggagaggcagctggagagtcctgctatcct
cccttctttcctttccagtgcttggggggccgcagcctggcccgttctgaccccttcaaa
aacaaggatcactttcagtttaccaacctcttcctgtgcgggctgttgtccaaagccagg
cagaaactcctgcagcacctggtgcccgcagccaccctgcggagaaagcgcaaggccctg
tggtcacacctgtttgccagcctgcgcgcctacctgaagagcctgccccgggttcagtcc
gggggcttcagccaggtgcaggctatgcccacgttcctctggatgcttcgctgcatctac
gagacacagagccagaaggtggggcagctggcggccaagggcatctgcgccaactacctc
aagctaaccttctgcaatgcctgctccgctgactgcagcgcgctttcctttgtcctgcac
cacttccgcaagcggctggcccttgatctggacaacaacaatctcaacgactacggcgtg
cgggagctgcagccttgcttcagccgcctcaccgtaatcagactcagcgtcaaccagatc
acagacagtggggtgaaggtgctatgtgaagagctgaccaagtacaaaatcctgacgtat
ttgggtttatacaacaaccagatcactgatgtgggagccaggtacatcgcccaaatcctg
gatgaatgcaaagccctcacccacctgaaactggggaaaaacaaaataacaagcgaagga
gggaagtgcctggccctggctatgaagaacagcacgtccatctcggagattgggatgtgg
ggcaatcaaataggggatgaaggagcaaaagcctttgcggaggctttgaggaaccacccc
agtctgaccaacctaagcctcgcatccaacggcatctccacggaaggagggaagagtctc
gccagggccctgcagcagaacacgtcgctgaagatattctggctgaccaaaaatgaactc
aacgacgaagtggcagagagctttgcagaaatgctgaaagtcaaccagacattgaagcat
ttgtggctcatccagaatcagatcacagccaccgggactgcccagctggccgaggcatta
cagaacaacactggcataacagagatttgtctaaatggaaacttgataaagccagaggag
gccaaagtctttgaagatgagaagcggatcatctgtttctga
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integrated database retrieval system
