Sciurus carolinensis (gray squirrel): 124990983 Help Entry 124990983         CDS       T08117                                  Name (RefSeq) collagen alpha-2(I) chain   KO K06236   collagen type I alpha Organism ncar  Sciurus carolinensis (gray squirrel) Pathway ncar04151   PI3K-Akt signaling pathway ncar04510   Focal adhesion ncar04512   ECM-receptor interaction ncar04518   Integrin signaling ncar04611   Platelet activation ncar04820   Cytoskeleton in muscle cells ncar04926   Relaxin signaling pathway ncar04933   AGE-RAGE signaling pathway in diabetic complications ncar04974   Protein digestion and absorption ncar05146   Amoebiasis ncar05165   Human papillomavirus infection ncar05205   Proteoglycans in cancer ncar05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:ncar00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     124990983   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     124990983    04518 Integrin signaling     124990983  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     124990983   09142 Cell motility    04820 Cytoskeleton in muscle cells     124990983  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     124990983   09152 Endocrine system    04926 Relaxin signaling pathway     124990983   09154 Digestive system    04974 Protein digestion and absorption     124990983  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     124990983   09172 Infectious disease: viral    05165 Human papillomavirus infection     124990983   09174 Infectious disease: parasitic    05146 Amoebiasis     124990983   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     124990983   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     124990983  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncar00536]     124990983 Glycosaminoglycan binding proteins [BR:ncar00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    124990983 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  124990983 NCBI-ProteinID:  XP_047417547 LinkDB All DBs Position 8:complement(48023563..48058991) Genome browser AA seq 1366 aa AA seqDB search MLSFVDTRTLLLLAVTSCLATCQSLQEGTARKGPTGDRGPRGERGPPGPPGRDGEDGPNG PPGPPGPPGPPGLGGNFAAQYDGKGVGMGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP GEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR GHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSV GPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPSGPAGPRGEVGLPGLSGPVGPPGNP GANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK GEPGSAGPQGPPGPSGEEGKRGSNGEPGSAGPAGPPGLRGNPGSRGLPGADGRAGVMGPP GNRGATGPAGVRGPNGDSGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI GPAGARGEAGNIGFPGPKGPTGDPGKSGDKGHSGLPGARGAPGPDGNNGAQGPPGPQGVQ GGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAV GPAGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGASGPGGLPGERGAAGIPGGKGEKGEP GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA GPNGFAGPAGAAGQPGAKGERGTRGPKGENGVVGPAGPVGAAGPSGPNGPPGPAGGRGDG GPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGETGASGPP GFTGEKGPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGIAGALGEPGPLGIA GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNIGPAGAA GAPGPHGAVGPTGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGHRGLP GLKGHNGLQGLPGLAGQHGDQGSPGPVGPAGPRGPAGPSGPVGKDGRSGHPGTVGPAGVR GSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDATLK SLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG ETCIRAQPENIPAKNWYRSSKAKKHIWLGETINGGSQFEYNVEGVTSKEMATQLAFMRLL ANHASQNITYHCKNSIAYMDGETGNLDKAVLLQGSNDVEFVADGNSRFTYTVLVDGCSKK TNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFGLDIGPVCFK NT seq 4101 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcgtgcctagca acatgccaatctttacaagagggaactgcaagaaagggcccaactggagatagaggacca cgtggagaaaggggtccaccaggccccccaggcagagatggtgaagacggtcccaatggt cctcctggtccacctggccctcctggcccccctggtcttggtgggaactttgctgctcag tatgacggaaaaggagttggaatgggacctggaccaatgggtttaatgggacctagaggc cctccaggtgcagctggagcccctggccctcaaggtttccaaggacctgctggtgagcct ggtgaacctggtcaaactggtcctgcaggtgctcgcggtccacctggtcctcctggcaag gctggtgaggatggtcaccctggaaaacctggacgacccggtgagagaggagttgttgga ccacagggtgctcgtggtttccctggaactcctggactgcctggcttcaagggcattagg ggacacaatggtctggatggattaaagggacagcctggtgctcaaggtgtgaagggtgaa cctggtgccccaggtgaaaatggaactccaggtcaagcaggagcccgtgggcttcctggt gagagaggacgtgtcggcgcccctggcccagctggtgcccgaggcagcgatggcagtgtt ggtcctgtgggtcctgctggtcccattggatctgctggtcctccaggcttcccaggtgct cctggtcccaagggtgaaattggacctgtgggtaaccctggtccttccggtcctgcgggt cctcgtggtgaagtgggtcttcctggtctttctggccctgttggacctcctggtaatcct ggagccaatggccttactggagctaagggtgcagctggtcttcctggtgttgctggggct cctggcctccctggtccccgtggtattcctggccccgttggtgctgctggtgctactggt gccagaggacttgttggtgaacctggtccagctggctccaaaggagagagtggtaacaag ggtgagccaggttctgctggtccccaaggtcctcccggtcccagtggtgaagaaggaaag agaggctccaatggtgaacctggatctgctggccctgcaggacctcctgggttgagaggt aaccctggttctcgtggtcttcctggagctgatggcagagctggtgtcatgggccctcct ggtaatcgtggtgcaactggccctgctggagttcgaggccccaatggagactctggtcgc cctggggagcctggtctcatgggaccccgaggtcttcccggttcccctggaaatattggc ccagctggtaaagaaggtcctgtgggtctccctggtattgacggcagacctggcccaatt ggcccagctggagcaagaggcgaggctggcaacattggattccctggacccaaaggcccc accggtgatcctggcaaaagtggtgataaaggtcactctggactccctggtgctcggggt gctccaggtcctgatggaaacaatggtgctcagggcccccctggacctcagggtgtccaa ggtggcaaaggtgaacagggtcctgctggtcctccaggcttccagggtctgcctggcccc tcaggtaccactggtgaagttggcaaaccaggagaaaggggtatccctggtgaatttggt ctccctggtcctgctggtccaagaggggaacgtggtcccccaggtgagagtggagctgtt ggtcctgctggtcccattggaagccgaggtccttctggacccccagggcctgatggaaac aagggtgaacctggtgtggttggtgctcccggcactgctggtgcatctggtcctggtgga ctcccaggagagaggggtgctgctggcatacctggaggcaagggagaaaagggtgaacct ggcctcagaggtgaaattggtaaccctggcagagatggtgctcgtggtgctcctggtgct gtaggtgcccctggtcctgctggagctacaggtgaccggggtgaagctggtgctgctggt cctgctggcccagctggtccacggggtagccctggtgaacgtggtgaggttggtcccgct ggtcccaatggatttgctggtcctgctggtgctgctggtcaacctggtgctaaaggagag agaggaaccagaggacctaagggtgaaaatggtgttgttggtcctgctggccccgttgga gctgctggcccatctggtccaaatggtccccctggtcctgctggaggtcgtggtgatgga ggaccccctggtatgactggtttccctggtgctgctggacgaactggtccccctggaccc tctggtatcactggccctcctggtccccctggggctgctggtaaagaaggacttcgaggt ccccgtggtgaccaaggtcctgttggccgaactggagaaacaggtgcatctggcccccct ggcttcactggagaaaagggtccctctggagagcctggtactgctggacctcctggcacc ccaggtcctcagggtcttcttggtgctcctggtattctgggtctccctggctctaggggc gaacgtggtctgccaggtattgctggtgctttgggtgaaccgggtcctctgggcattgca ggccctcctggggcccgtggtccccctggtgctgtgggcagtcccggagtcaatggtgct cctggtgaagctggtcgtgatggcaaccctggaagtgatggtcctccaggtcgtgatggt caacctggacacaagggagagcgcggttaccctggcaatattggtcctgctggtgctgca ggtgcccctggtcctcatggcgccgtgggtcccactggcaaacatggaaaccgtggtgaa cctggtcctgctggttctgttggtcctgtgggtgctgtcggtccaagaggtcctagtggc ccacaaggcattcgaggtgacaagggagagcctggtgataaagggcacagaggtcttcct ggcttgaagggacacaatggattacagggtcttccaggtctcgctggtcaacatggtgat caaggttctcctggccccgttggtcctgctggccccaggggtcctgctggtccttctggc cctgttggcaaagatggtcgctctggacatcctggtactgttggacctgctggcgttcga ggatctcagggtagccaaggacctgctggccctcctggtccccctggtcctcctgggcct cctggtgtaagtggcggtggttacgactttggttatgatggagacttctacagggctgac cagcctcgctcaccaccttctctcagacccaaggattatgaagttgatgccaccctgaag tccctcaacaaccagattgagacccttcttactcctgaaggctctaggaagaacccggct cgcacatgccgtgacttgagactcagtcacccagagtggagcagtggttactactggatt gaccccaaccaaggatgcactatggatgctatcaaagtatactgtgatttctctactggc gaaacctgcatccgggcccaacctgaaaacattccagccaagaactggtacaggagctcc aaggccaagaagcacatctggttaggagaaactatcaatggtggtagccagtttgaatac aatgtagaaggagtaacctccaaggaaatggccactcaacttgccttcatgcgcctgctg gccaatcatgcctctcagaacatcacctaccactgcaagaacagcattgcatacatggat ggggagactggcaacctggataaggctgtccttctgcagggctccaatgatgttgaattt gttgccgatggcaacagcagattcacttacactgttcttgtagatggctgctctaaaaag acaaatgagtggggtaagactatcattgaatacaaaacaaacaagccatctcgcctaccc ttccttgatattgcacctttggacatcggtggcgctgaccaagaattcggtttggacatt ggcccagtctgtttcaaataa

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