Sciurus carolinensis (gray squirrel): 124991643
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Entry
124991643 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
ncar05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124991643
09124 Replication and repair
03420 Nucleotide excision repair
124991643
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124991643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124991643
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124991643
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124991643
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124991643
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Zn_ribbon_GTF2H2
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
124991643
NCBI-ProteinID:
XP_047418325
LinkDB
All DBs
Position
8:115801604..115803091
Genome browser
AA seq
339 aa
AA seq
DB search
MMHHLYVVVDASRTIEDQDLKPNRLTCTLKLLEYFIEEYFDQNSISQIGIIVXKSKRAEK
LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGYTSREVLIIFSSLTT
FNPSNIYDLIKTLKAAKIRVSVIGLSVEVQVCTVLARETGGTYHVILDEIHYKELLTHHV
SPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNTEPGLTLGGYFCPQCRK
KYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEDYKGERFCYGCQGELKDQH
VYVCPVCQNVFCVDCDVFVHDSLHCCPGCIHKIPTPSGI
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaccacctttatgtggtagtagatgcatcaagaacaatagaagaccaagattta
aagcctaatagattgacatgcactttaaagttgctggaatacttcatagaagagtatttt
gatcaaaattctatcagtcagattggaataattgtgnctaaaagtaaaagagctgaaaaa
ctgactgaactctcaggaaacccaaggaaacatataacatctttgaagaaagctgttgat
atgacgtgtcatggagaaccatctctttataattctctaagcatggctatgcaaactcta
aaacacatgcctggatatacaagtagagaagtcctaatcatctttagcagccttacaact
ttcaatccatctaatatttatgatctaatcaagaccctaaaggcagctaaaattagagtg
tctgttattggattatctgtagaggttcaggtttgcactgtacttgctcgtgaaactggt
ggcacataccatgttattttagatgaaatccattacaaagaattgctaacacatcatgtt
agtcctcctcctgccagctcaagttctgaatgctcacttattcgtatgggttttcctcaa
cacaccattgcttctttgtctgatcaagatgcaaaaccctctttcagcatggcacatttg
gataataacactgagccagggcttacattaggaggctatttttgcccacagtgtcgtaaa
aagtactgtgaacttcctgttgaatgtaaaatatgtggtcttactttggtgtctgctcca
catttggcacggtcttaccaccatttatttcctttggatgcttttcaagaaattccccta
gaagactataaaggagaaagattttgttatggatgtcagggggaattgaaagaccaacat
gtctacgtttgtcctgtgtgccaaaatgttttctgtgtagactgtgatgtttttgttcat
gactctctccactgttgtcctggctgtattcataagattccaactccttcaggtatttga
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