KEGG   Sciurus carolinensis (gray squirrel): 124991646
Entry
124991646         CDS       T08117                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03030  DNA replication
ncar03410  Base excision repair
ncar03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124991646
   03410 Base excision repair
    124991646
   03420 Nucleotide excision repair
    124991646
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncar03032]
    124991646
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124991646
Enzymes [BR:ncar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     124991646
DNA replication proteins [BR:ncar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    124991646
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      124991646
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 APP_N
Other DBs
NCBI-GeneID: 124991646
NCBI-ProteinID: XP_047418330
LinkDB
Position
8:complement(143084913..143127422)
AA seq 2280 aa
MVLRHTGRRRAEPGADGEASRDDGPSSSVSALKRLERSQWTDKMDLRFGFERLKEPGEKT
GWLINMHPTEVLDEDRRLVSAVDYYFIQDDGSRFKVALPYKPYFYVATRKGCEREVSSFL
SKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIKLSFHTVEDLVKVRKEISPAVKKNREQ
DRVSDAYTTMLSSVLQGGSVITDEEETSKKVADQLDNIVDMREYDVPYHIRLSIDLKIHV
AHWYNVRYRGNAFPVDLTRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMI
DGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEVHLIQRWFEHIQETKPTIMV
TYNGDFFDWPFVEARAAAHGLSMYQEIGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVG
SHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYLKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKLTEDGHVLDAETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEKTMRHAIEEEEKVPVEQATNFQEVC
DQIKTKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVNEATCAACDFNKPG
ANCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLFPQGPMRAFHELSREEQAKYEK
RRLADYCRKAYQKIHLTRVEERLTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
AAVEVGDATEVKRCRNMEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKTTNTKKPKVTISYPGAMLNIM
VKEGFTNDQYQELAEPSSLTYITRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYGSVAKVADYWLDVLYSK
AANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYII
SRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRTILDWDYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKSDIYKQKKISELFVLEGKRQIVMAQA
PEDSPSSGTPDMEDFGLTKPPHSAVPVATKRKRVLWESQEESQDLTLTVPWREILGQPPT
LGTTQEEWLVWLRFHKKKWQLQARQRLARRKKQRLEPAEGLLRHGAIRDGPATGLGSFLR
RTARSILDLPWQIVQISQTSQAGLFRLWAIIGSDLHCIKLSIPRIFYVNQRVAKAEEGPS
CRKVNRILPRSNMVYNLYEYSVPEDMYQEHINEINTELSAPDIEGVYETQVPLLFRALVQ
LGCVCVVNKQLVPHLSGWETETFALEHLEMRSLAQFSYLEPGSIRHVYLYHHSQGHKALF
GLFIPSQRRASVFVLDTVRSNQMPSLSALYSAEHSLLLERVGPELLPPPRHTFEVRAETD
LKTICRAIQRFLLAYKEERRGPTLIAVQSSWELQRLASEIPVLEEFPLVPVRVVDKISYG
VLDWQRHGARRMIRHYLNLDTCLSQAFEMSRYFHIPIGNLPEDISTFGSDLFFARHLQRH
NHLLWLSPTARPDLGGKEADDNRLVMEFEDRATVEINSAGCYSTVCVELDIQNLAVNTIL
QSHHINDMEGAGSMGISFDVIQQASLEDMVTGNQASNAPASYDETALCSSTFRILKSMVV
GWVKEIMQFHNVYADNQVVHFYRWLQSSGSLLHDPALHRTLHSMMKKLFLQLVAEFQRLG
SSVVYANFNRVILCTRKRRVEDAIAYVEYITNSIHSKEIFHSLTISFSRCWEFLLWMDPS
NYGGIKGKVPSRIHCGQQEPQKGEEAEDEQEDEDEQEEEDVEESGVEDLLENNWNILQFL
PQAASCQSYFLMIVSAYIVAVHHSMKEELRRGAPGTTPVKRRGASQFSQEAEGAAGALPG
MITFSQDYVANELTQSFFTITQKIQKKVTGSRSSTEPSEMFPVLPGSHLVLNNPALEFIK
YVCKVLSLDTNITNQVNKLNRDLLRLVDIGEFSEEAQFQDPCRSYVLPEVICHSCNFCRD
LDLCKDSSFSQDGGVLPQWLCPNCQAAYNSAAIEMALIEALQRKLMAFTLQDLVCLKCRG
VKETHMPVYCSCAGDFALTIRTQVFMEQVGTFQNIAQHYGMPHLRETLEWLLQESPRPGH
NT seq 6843 nt   +upstreamnt  +downstreamnt
atggttctgaggcacaccgggcggcgacgcgcggagccgggcgcggacggcgaggccagc
cgcgatgatggcccatcttcctcagtctctgcgctgaagcgcctggaacggagtcagtgg
acggataaaatggacttgcgatttggttttgagaggctgaaggagcctggtgagaagact
ggctggcttatcaacatgcaccctactgaggtgttagatgaagatagacgcttagtcagt
gcagtagattactactttattcaagacgatggaagcagatttaaggtggccttgccctat
aagccgtatttctacgttgcaaccagaaagggttgcgaacgagaagtttcatcttttctc
tccaagaagtttcagggtaaaattgcgaaagtagagactgtccccaaagaggacctggac
ttgccaaatcacttggtgggtttgaagagaaattacatcaaactgtccttccacactgtg
gaggaccttgtcaaagtgaggaaggaaatttcccctgctgtgaagaagaatcgggagcag
gaccgtgtcagtgatgcttacacaaccatgctctccagtgttctgcaagggggcagtgta
attactgatgaagaggaaacctctaagaaggtagctgaccaactggacaacatagtggac
atgcgcgagtatgacgtcccctaccacatccgcctctccattgacctcaagatccacgtg
gctcattggtacaacgtcagataccgaggaaatgcttttccagtggacctcacccgccgg
gacgaccttgttgagcgacccgaccctgtggtgttggcatttgacattgagaccaccaaa
ctgcctctcaaatttcccgatgctgaaacagaccagattatgatgatttcctacatgatc
gatggccagggctacctcatcaccaacagggagatcgtttctgaagacatcgaagatttt
gagttcacccccaaaccagaatacgaaggacccttttgtgtcttcaatgaacctgatgag
gtccatctgatccagagatggtttgagcacatccaggagaccaaacccaccatcatggtc
acctacaatggggacttttttgactggccattcgtagaggccagagcagcagcccacggc
ctgagcatgtaccaggagatcggcttccagaaggacagccagggggagtacaaggcgccc
cagtgcatccacatggactgcctcaggtgggtaaaaagggacagctaccttcctgtgggc
agtcataacctgaaggcagctgccaaggccaagcttggctacgaccctgtcgagctggat
cctgaggacatgtgccggatggccaccgagcagccccagactctggccacgtactctgtg
tcggacgcggttgccacctactacctgtacctgaagtacgtgcatcccttcatattcgcc
ctgtgcaccattatccctatggaacccgatgaggtgctgaggaagggctccggcacgctg
tgcgaggccttgctgatggtgcaggccttccacgccaacatcatcttccccaacaagcaa
gagcaggagttcaacaagctaacagaggacggtcacgtgctggatgccgagacctacgtg
gggggccacgtggaggcactcgagtccggcgtcttccgcagtgacatcccctgccggttt
aagatgaaccctgctgcctttgacttcttgctgcagcgggtggagaagaccatgcgccac
gccattgaggaggaggagaaggtgcctgtggagcaggccaccaacttccaagaggtgtgt
gatcagataaagaccaagctcacctccctgaaagatgttcccaaccgaatcgaatgtccc
cttatctaccacctggatgtgggggccatgtatcccaacatcatcctaacaaaccgcctg
cagccctcggccatggtcaacgaagccacctgtgctgcgtgtgacttcaacaagcctgga
gcaaactgccagaggaagatggcctggcagtggaggggcgagttcatgccagccagtcgc
agtgaataccatcggatccaacaccagctggagtcagagaagttcccccccttgttcccc
caggggcccatgcgggcctttcatgagctgtcccgggaggagcaggccaaatatgagaaa
cggaggctggcagattactgccggaaagcctaccagaagattcacctcaccagggtggaa
gagcgcctcaccaccatctgccagcgggagaactccttctacgtggatacagtgcgtgcc
ttccgggacaggcgctatgagttcaaagggttgcacaaggtgtggaaaaagaagctctcc
gcggctgtggaggtgggcgatgcgaccgaggtgaagcgctgcaggaacatggaggtcctg
tacgactcgctgcagctggctcacaagtgcatcctcaactccttctacggctatgtcatg
cgcaagggggcccgctggtactccatggagatggctggcattgtctgcttcacaggggcc
aacatcatcacccaagcccgggaactgatcgaacagatcgggaggcccttggaactggac
acagatggaatatggtgcgtcctgcccaatagcttcccagaaaattttgtcatcaagacg
accaatacaaagaaacccaaggtgaccatctcctaccctggggccatgttgaacatcatg
gtcaaggaaggctttaccaacgaccagtaccaggaattggcagagccctcctcactcacc
tacatcacccgctcagagaatagtatcttttttgaagttgatggtccctaccttgccatg
atccttccagcctccaaggaggaagggaagaaactgaagaagagatatgctgtattcaac
gaagatggttccctggctgagctgaagggattcgaggtcaaacgccgtggggagctgcag
ctgattaaaatcttccagtcctcggtgttcgaggccttcctcaagggtagcaccctggag
gaagtgtacggctctgtcgccaaggtggccgactactggctggatgtgctgtatagcaag
gcagctaacatgcctgattctgagctgtttgagttgatctctgagaaccgctcgatgtct
cggaaactggaagattacggagagcagaagtccacatccatcagcacagcaaagcgcctg
gccgagttcctgggagaccagatggtcaaggatgcagggctgagctgccgctatatcatc
tcccgcaagcctgagggctctcctgtcaccgagagggccatcccacttgccattttccaa
gcagagcccacagtgaggaagcactttctccgaaaatggcttaagagctcatcccttcag
gactttgatattcggacaattctggactgggactactacatcgaacgcctggggagtgcc
atccagaagatcatcaccatccctgcggctctgcagcaggtgaagaacccagtgccacgt
gtcagacatccagactggctgcacaagaaactactggagaaaagtgacatctataagcag
aagaagatcagtgagctctttgtccttgagggcaagagacagattgtgatggcacaggcc
ccagaagacagccccagctcaggcactcccgacatggaggactttggcctcacaaagcca
ccccactcagcagtccctgtcgctactaagaggaagcgagtcctgtgggagagccaggag
gagtctcaggacctcacgctaacagtgccctggcgggagatcttggggcagcctcccaca
cttggcaccacccaggaagagtggctggtctggctccgtttccacaagaagaaatggcag
ctgcaggcccgacagcgcctggcccgcaggaagaagcagcgtctggagcctgcggagggt
ctgctgaggcatggagccatcagagacgggcctgccacagggctggggagcttcttgcga
agaactgcacgtagcattctagaccttccctggcagattgtgcagatcagccagaccagc
caggctggcctgttcaggctatgggccatcattggcagtgacttgcactgtatcaagctg
agtatcccccgcatattctatgtgaatcaacgagtggccaaagcagaggaggggccttcc
tgtcggaaggtgaatcgcattcttcctcgttccaacatggtctacaatctctatgagtac
tcagtgccagaggacatgtaccaagaacatatcaacgagatcaacacggaattgtcagcg
ccagacattgagggcgtctacgagactcaggtcccgttgttgttccgggccctggtgcaa
ctgggctgtgtgtgtgtggtcaacaaacagctggtgccgcacctctcgggctgggaaacc
gagacctttgccttggagcaccttgagatgcgttctctggcccagttcagctacctggaa
ccaggcagcatccgccacgtctacctctaccaccactcgcagggccacaaggcactcttt
gggctcttcatcccctcacagcgcagagcatctgtgtttgtgttagacactgtgcgcagc
aaccagatgcccagcctcagtgccctgtactcagcagagcacagccttctgctggaaagg
gtgggccccgagctcctgccaccccccagacacacctttgaggttcgcgctgaaactgac
ctgaagaccatctgcagggccatccagcgctttctgctggcctacaaggaggagcgccgg
ggacccaccctcattgcagtgcagtccagctgggaactgcagaggctggccagtgagatt
cctgtcttggaggagttcccactggtacctgtgcgtgtggtcgacaagatcagctatgga
gtcctggactggcagcgtcatggagcccgccgcatgatccggcactacctcaacctggac
acctgcctgtcacaggcctttgagatgagcaggtatttccacattcccattgggaatctg
ccagaggacatctccacctttggctccgatctcttctttgcccgccacctccagcgccac
aaccacctgctctggctgtcccctacagcccgccccgacctgggcgggaaggaggccgat
gacaaccgcctcgtcatggagttcgaggaccgcgccacggtggagatcaacagtgctggc
tgttactccacagtgtgtgtggagctggacattcagaacctggcagttaacaccatcctc
cagtcccaccacatcaacgacatggagggggccggcagcatgggcatcagctttgacgtg
atccagcaggcctcgctggaggacatggtcacaggcaatcaggcctccaatgccccagcc
agctatgacgagacagccctttgctccagcaccttcaggatcctcaagagcatggtcgtg
ggctgggtgaaggagatcatgcagttccacaatgtctatgccgacaaccaggtggtgcac
ttctaccgctggctgcagtcctcgggctctctgctgcacgacccggccctgcaccggacg
ctgcacagcatgatgaagaagctcttcctgcagcttgttgctgagttccagcgcctgggg
tcatcagtcgtctacgccaacttcaaccgggtcatcctctgtacacggaagcgccgcgta
gaggacgccatcgcctacgtggagtacatcaccaacagcatccattctaaagaaatcttc
cattccctgaccatttccttctcacgatgctgggaattccttctctggatggatccatct
aattatggtggaatcaaaggaaaagtcccatctagaattcattgtggacagcaagagccc
caaaaaggagaggaagcagaggacgagcaggaagatgaggacgagcaggaggaggaggac
gtggaggagtccggggtggaggacctactggagaacaactggaacattttgcaatttttg
ccacaggcagcctcctgccagagctacttcctcatgatcgtttcagcgtacatcgtggcg
gtgcaccacagcatgaaggaagagctgaggcgtggcgccccgggcaccacccctgtgaag
aggaggggggccagccagttctcccaggaggctgagggggcggccggagccctccctgga
atgatcaccttctctcaggattacgtcgcaaacgagctcactcagagcttcttcaccatc
actcagaagattcagaagaaggtcacgggctctcggagctccactgagccctcagagatg
ttccccgtgctccccggctcacacttggtgctcaataaccctgctctggagttcatcaag
tacgtgtgtaaggtgctgtctttggacacaaacatcaccaaccaggtgaataagctgaac
cgagacctgcttcgcctggtggacattggcgagttctctgaggaggcccagttccaagac
ccctgccgctcctatgtgctccccgaggtgatctgccacagctgcaacttctgccgggac
ttggacctgtgcaaagactcctccttctcacaggatggaggtgtcctgcctcagtggctc
tgccccaactgtcaggccgcctacaactcagctgccatcgagatggccctgattgaagcc
ctacagagaaagctgatggccttcaccctgcaggacctggtctgcctgaagtgccgtggc
gtgaaggagacccacatgccagtctactgcagctgtgctggggactttgccctcaccatc
cgcacgcaggtcttcatggagcaggtcggcaccttccagaacatcgcccagcactatggc
atgccacacctcagggagaccctggagtggctgctgcaggagagccctcggccaggccac
tag

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