KEGG   Sciurus carolinensis (gray squirrel): 124991983
Entry
124991983         CDS       T08117                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03030  DNA replication
ncar03410  Base excision repair
ncar03420  Nucleotide excision repair
ncar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124991983
   03410 Base excision repair
    124991983
   03420 Nucleotide excision repair
    124991983
   03430 Mismatch repair
    124991983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncar03032]
    124991983
   03036 Chromosome and associated proteins [BR:ncar03036]
    124991983
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124991983
DNA replication proteins [BR:ncar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    124991983
  DNA Replication Termination Factors
   ELG1-RFC complex
    124991983
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    124991983
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     124991983
  Check point factors
   HRAD17(Rad24)-RFC complex
    124991983
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_24 AAA_16 AAA_11 AAA_22 AAA_14 AAA_assoc_2 RuvB_N DEAD ResIII DUF815 AAA_5 AAA_19 PhoH ATPase_2 AAA_7 TIP49 AAA_30 nSTAND3 TniB Mg_chelatase DNAX_ATPase_lid bpMoxR AAA_3 NPHP3_N Thioredoxin_6 AAA_2
Other DBs
NCBI-GeneID: 124991983
NCBI-ProteinID: XP_047418917
LinkDB
Position
8:complement(134585892..134596521)
AA seq 331 aa
MEPSAARIRNLPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTST
ILACAKQLYKDKEFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADA
MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHV
VEEEKVDISEDGMKALVTLSCGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIAN
ILDWMLNQDFTTAYRRIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIE
YRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq 996 nt   +upstreamnt  +downstreamnt
atggaaccctcggcggccaggatcaggaacctgccctgggttgaaaaataccggccacaa
acactgagtgatctcatttctcatcaggacattctgagtaccattcagaaatttatcagt
gaagaccgactgccacacctgcttctctatggccctccggggacaggaaagacatccacc
atcctagcctgtgctaaacagctatacaaagacaaagaattcagctccatggtcctggag
ctgaatgcttcagatgaccgaggaatagatattgttcggggaccaatcctgagctttgcc
agcacaaggacaatatttaagaaagggttcaagctggtaatcttggatgaggccgacgcc
atgactcaagatgcccagaatgccttgagaagagtgattgagaaattcactgaaaatacc
cgattttgcctcatctgtaactatctgtccaagatcatccccgccttgcagtctcggtgc
acgaggttccggtttggtcccctgacgcctgaactcatggttccccgcctggaacatgtt
gtggaagaagagaaagttgatataagtgaagatggcatgaaagcacttgtcactctctcc
tgcggagatatgcgaagggccctgaatattttgcagagcaccaatatggcctttgggaag
gtgacggaggagacggtctacacctgcacagggcacccgctcaagtcggacatcgccaac
attctggactggatgttgaatcaggacttcaccacagcctacagacgtatcatggagttg
aaaactctgaagggtttggcgttgcacgacatcctgaccgaggttcacttgttcgtgcac
agagtggactttccatcatcagttcgaatacatttgttgaccaaaatggcggacatcgag
tacagactttctgttggcaccagtgagaagattcagctgagttccctcattgccgctttc
caggtcacccgagacctgattgtcgcagaggcctag

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