Sciurus carolinensis (gray squirrel): 124991984
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Entry
124991984 CDS
T08117
Name
(RefSeq) sonic hedgehog protein isoform X1
KO
K11988
sonic hedgehog
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04340
Hedgehog signaling pathway
ncar04360
Axon guidance
ncar05200
Pathways in cancer
ncar05205
Proteoglycans in cancer
ncar05217
Basal cell carcinoma
ncar05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124991984
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
124991984
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124991984
05205 Proteoglycans in cancer
124991984
09162 Cancer: specific types
05226 Gastric cancer
124991984
05217 Basal cell carcinoma
124991984
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124991984
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124991984
Peptidases and inhibitors [BR:
ncar01002
]
Cysteine peptidases
Family C46: hedgehog family
124991984
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Morphogens
124991984
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
124991984
NCBI-ProteinID:
XP_047418918
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Position
8:2546967..2557559
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AA seq
455 aa
AA seq
DB search
MDEMLLLARCLLVVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDQGRLLYSD
FLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSAGDPEALWGPGPPPGRR
ALFASRVRPGQRVYVVAERDGDRRLLPAAVQSVTLREEATGAYAPLTAQGTILINRVLAS
CYAVIEEHGWAHRAFAPFRLAHALLAALAPAHTDRGGEGDGGGGGRAPQPAPGAAEAPAA
AAAGIHWYSQLLYQIGTWLLDGEALHPLGMAVKSS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggacgagatgctgctgctggcgagatgtctgctggtggtcctggtctcctcgctgctg
gtgtgctcggggctggcgtgcggacccggtaggggatttgggaagaggcgccaccccaaa
aagctgacccctttagcctacaagcagtttatccccaatgtggccgagaagaccctgggg
gccagcggcagatatgaagggaagatctccagaaactccgagcgatttaaagaactcacc
cccaattacaaccccgacatcatatttaaggatgaagaaaacaccggagcggaccggctg
atgactcagaggtgtaaggacaagttgaatgccttagccatctctgtgatgaaccagtgg
ccaggagtgaagctgcgggtgaccgagggctgggatgaggatggacaccactcggaggag
tcgctgcactatgagggtcgtgctgtggacatcaccacatctgaccgtgaccggagcaaa
tatggcatgctggctcgcctggcggtggaggccggctttgactgggtctactacgagtcc
aaggcacacatccactgctccgtgaaagcagagaactcggtggcggccaaatccggcggc
tgcttccccggctcagccacggtgcacctggagcagggtggcactaagctggtgaaggac
ctgcgtcccggggaccgcgtactggcggcggacgaccagggccggctgctctacagcgac
ttcctcaccttcctggaccgcgacgacggcgccaagaaggttttctacgtgatcgagacg
cgggagccgcgcgagcgcctgctgctcacggccgcgcacctgctcttcgtggcgccgcac
aacgactcggccggggaccccgaggcgctgtggggcccggggccgccgccggggcgtcgg
gcgctcttcgccagccgcgtgcggccaggccagcgagtgtacgtggtggccgagcgcgac
ggggaccgccggctgctgcccgcggcggtgcagagcgtgacgctgcgcgaggaggccacg
ggcgcgtacgcgccgctgacggcgcagggcaccatcctcatcaaccgggtgctggcctcg
tgctacgccgtcatcgaggagcacggctgggcgcaccgggccttcgcgcccttccgcctg
gcgcacgcgctgctggccgcgctggcgcccgcgcacacggaccgcggcggcgagggcgac
ggcgggggcggaggccgcgccccgcagcccgcgccgggggcggccgaggcgcccgcagcg
gccgccgcgggcatccactggtactcccagctgctctaccaaatcggcacctggctgttg
gacggcgaggccctgcacccgctgggcatggcggtcaagtccagctga
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integrated database retrieval system
