Sciurus carolinensis (gray squirrel): 124992384
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Entry
124992384 CDS
T08117
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
124992384
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ncar01001
]
124992384
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124992384
Enzymes [BR:
ncar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124992384
Protein kinases [BR:
ncar01001
]
Serine/threonine kinases: Other
Other
124992384
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124992384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
124992384
NCBI-ProteinID:
XP_047419068
LinkDB
All DBs
Position
9:26552601..26628197
Genome browser
AA seq
1507 aa
AA seq
DB search
MTTVAVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDR
HPGRADPECMLGHLLRILFKNDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAV
VFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLR
ELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGEQEEASGDMEIS
FHLDSGHKTSSRVNSATKPEEGGLKKNKSAKQGDRESFRKAKQKLGFSSSDPDRMFVELS
NSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYI
DLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYL
SYNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRY
DGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVK
QSLQRTEGGILVHPQPPYKACSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLL
LQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLAESVDVLDEAGSTISTVGIS
IILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQTPKSSEH
TLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPL
FSSCQIQQLMKEPVLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQ
SRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTAASHSSAFTPVTAAASPVSLP
RTPRIANGIATRLGSHAAVGASAPSAPTAHPQPRPPQGSLALPGPSYVGNSPLIGRISFI
RERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCK
NPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRF
RPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITH
LEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIA
HIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNM
NISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDD
LMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNM
DTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEED
DNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDD
IILSLNE
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgactacagtagcggtacatgtggactcaaaagccgagctcactaccctgctggagcag
tgggaaaaggaacatggcagtgggcaggacatggtacctatccttaccaggatgtctgaa
ttgattgaaaaagaaactgaagaatatcgtaagggcgatccagacccatttgatgatcga
catcctggtcgagctgatccagagtgtatgctgggccatttgctgagaatactcttcaag
aatgatgatttcatgaatgcactggtgaatgcatatgtgatgacaagccgagagccccct
ttaaacactgccgcgtgcagactgcttctggacatcatgccagggctggaaaccgctgtt
gtttttcaagaaaaggaaggaatcgttgaaaatcttttcaaatgggcccgagaggctgat
cagcctttgaggacatattctactggactattaggaggtgctatggaaaatcaagatatt
gctgccaactatagggatgaaaattcacagctggtggcgatagttcttcgaagactgagg
gaactacagcttcaggaagtggctttgcggcaagaaaacaagcgtcctagcccacggaag
ctgtcttctgagccccttttgcctctggatgaggaagctgtggatatggactatggtgat
atggcagtagatgtagtggatggagaacaagaagaagcttctggagacatggagatctcc
tttcatcttgattcaggccataagactagtagtagagtaaactcagcaaccaaacctgag
gaaggaggattgaagaaaaacaagtcagcaaaacagggtgacagagagagctttaggaaa
gccaagcaaaaattgggtttctcatcttccgatccagatcgcatgtttgttgaactgtct
aatagcagctggtcagaaatgtccccctgggtgattggcaccaattataccctatatcct
atgactcctgctattgagcagcgactcattctccaatatttgactcctctaggagaatat
caggagttacttcccatattcatgcaacttggatcacgggagttgatgatgttctatatt
gacctgaaacagaccaatgatgtcttgcttacatttgaggcactcaagcatctggcatct
ctcctgctccataacaaatttgccacagaattcgttgcccatggtggagtacagaaatta
ctggaaattcctcgtccttctatggctgcaactggtgtatccatgtgcttgtattacctg
tcctataaccaggatgctatggaaagagtttgcatgcatccccacaatgttttgtctgat
gtggtgaactataccctgtggttaatggagtgttctcatgcctcaggatgctgccatgca
accatgtttttctccatttgcttctcattccgggctgtgttggaactttttgaccgctat
gatggtcttcgtcgtctggtgaacttgattagtactttggaaattctaaatttggaagat
cagggtgcactgctgagtgatgatgaaatatttgctagccgtcaaactgggaaacatacc
tgcatggccttgcgcaaatattttgaggctcacctggccattaaattggaacaagtgaaa
cagtcacttcagaggaccgagggtggcattcttgttcaccctcaacccccatacaaggca
tgttcatatactcatgaacagattgtggaaatgatggagtttttgatagaatatggccca
gcccagctatattgggaaccagcagaagtcttccttaaactttcttgtgtgcaactcttg
ttacagcttatttctattgcctgcaattggaagacctattatgcaaggaatgacactgtg
cgctttgctttggatgtcctggctattctcactgtggtgccaaagattcagctccagttg
gcagaatcagtggatgtattggatgaagctggttctaccatctccactgtaggtatcagc
attattttgggagtggctgagggtgagttctttatccatgatgctgagattcagaagtcg
gcacttcagattatcatcaattgtgtgtgtggcccggataaccgaatttctagtatcggc
aaatttatctctggaactcctcgcagaaagttgcctcagacccccaagagcagtgagcac
actctggccaagatgtggaatgtggttcagtccaacaatggcatcaaggtgcttctgtct
ttactgtccatcaagatgcccatcacagatgcagaccagattcgggccctggcttgcaag
gctctggtgggcctctctcgcagtagcactgtccggcagatcatcagcaaactgcccctt
ttcagtagctgccagatccagcagctgatgaaggagcctgtgctgcaggacaagcgtagt
gaccatgtcaaattctgcaagtatgccgctgagctcattgaacgggtatcaggaaagcca
cttctcattggcactgatgtctccctggctcgactgcaaaaagcagatgttgttgcccag
tcaaggatctccttccctgagaaagagctgcttctgttgatacgaaaccatctcatttct
aaagggcttggagagacagcaactgtgttgacaaaagaggctgacctgcccatgactgct
gcctcccattcttctgccttcaccccagtaactgctgctgcttctcctgtctctcttcct
cgaacccctcgtattgccaatggcattgcaactcgattgggcagccatgctgctgtgggt
gcttctgctccttctgcccctactgcccatcctcagccacggcccccccagggttcatta
gctcttcctggtccatcttacgtaggcaattcccctttgattggtaggatcagttttatt
agagagagaccgtcaccttgtaatggcaggaaaatcagagtgttgcggcagaagtcggac
catggtgcctacagccagagcccagccataaaaaagcagttggacagacatcttccttcc
ccacctacgttggacagtatcatcacagaatatcttagagagcaacatgctcgctgcaag
aacccagttgccacctgtccacctttctctctctttactcctcaccaatgtcctgagcca
aaacagaggcggcaagcgccaataaactttacctcaaggctaaaccgcagggcatcattt
ccaaaatatggaggggtagatggcggatgctttgataggcaccttatctttagcagattt
cgccctatttcagtgtttcgggaagccaatgaagatgagagtggctttacctgctgtgca
ttctcagcacgggagcggttcctgatgcttggtacctgcaccgggcagttgaagctgtac
aatgtatttagtggacaggaggaggccagctataactgtcacaactcagccatcacacac
cttgaaccctccagggatgggtccttgctgctgacatctgctacctggagccagcctttg
tctgcactttggggaatgaaatcagtatttgatatgaagcattccttcacagaagatcat
tatgttgagttcagtaagcactctcaggatcgggtcataggtacaaaaggagacattgcc
catatttatgatattcagactggcaacaagctgttgactctgtttaacccagatcttgcc
aacaactacaagaggaattgtgccacctttaatcctacagatgatcttgtcttaaatgat
ggcgtcctctgggatgtccgctctgcacaggccattcacaagtttgacaagttcaacatg
aacatcagtggcgttttccatccaaatgggctggaggtcatcattaatactgagatttgg
gaccttcgaactttccatcttttacacactgttcctgctctggatcagtgtcgtgtggtg
tttaaccacacaggaacagtgatgtatggagctatgttgcaggcagatgatgaagatgac
ttaatggaagagaggatgaaaagcccttttgggtcatccttccgcacatttaacgcaact
gactacaaacctatagcaaccattgatgtgaagcggaatatctttgacctgtgtacagac
accaaagactgctatcttgctgtcattgagaatcaaggcagcatggatgctctgaacatg
gacacagtatgcagactgtatgaggtgggcaggcagcgtctggcagaggatgaggatgaa
gaggaagatcaggaagaggaagaacaggaggaagaggatgacgatgaagatgatgatgac
actgatgatttagatgaacttgacaccgaccagttgctggaggcggaattggaggaggat
gacaacaatgagaatgcaggagaggatggggacaatgacttctcaccctctgatgaggag
ctagcaaatcttctagaggaaggagaggatggggaggatgaagactctgatgcagatgag
gaagtggaactgatcctgggtgacactgacagctctgacaactctgatttagaagatgac
atcatcttatctttgaatgaatga
DBGET
integrated database retrieval system
