Sciurus carolinensis (gray squirrel): 124992481
Help
Entry
124992481 CDS
T08117
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124992481
03041 Spliceosome [BR:
ncar03041
]
124992481
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124992481
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
124992481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
124992481
NCBI-ProteinID:
XP_047419219
LinkDB
All DBs
Position
9:complement(129428444..129488875)
Genome browser
AA seq
1147 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKISSEPPQTTPNSIPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDVAAVTTATPAAVAPPASSVA
TPATAAAAATAAAPTATSPPPPQTAFGFPGDGMPQPAYAQHPNMDQFPPRMMGIQQDPVH
HQVPLPPNGQMPGYGLLPTPPFPPMAQPVIPPTPPVQQTFQPSFQAQNEPLTQKPHQQEM
EVEQPCIPEVKRHMSDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSP
RSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPI
ESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWD
VELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEP
VSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPG
VPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINED
TTKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGV
APGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGP
GGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQQSQPQPQQPPPP
QPQPQQPPPSQQPPPAQQQPQQFRNDSRQQFNSGRDQERFGRRSFGNRVENDRERYGNRN
DERENSNRDRREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEK
PEVTDRAGGNKTAEPPVSQVGNVDTVSELAKGEAEATVVKPSEELPAEATSSVEPEKDSG
SAAEAPR
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctagagccaagatgattctcatcactaaagctgctataaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccggagtacaaagtt
ccaggattatatgtaattgactcaatagtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttatat
ctctgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtgttcaaaattgaaattattcagcctcttttggacatggcagcaggaaccagtaac
gctgcccctgtagcagaaaatgttaccaacaatgaaggttcacctccacctccagtcaaa
atttcttctgaaccaccacaaaccactccaaactccatacctacagtaccacagttgccc
agctctgatgcttttgctgctgtggctcaactgtttcagacaactcaaggccaacagctt
cagcagatccttcagacttttcaacaacctccaaaaccacagtctcccgctcttgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagctg
cttgatagatttgattatgatgatgagccagaagctgtggaagaatcaaagaaggaagat
gttgctgccgtcaccactgcaacacctgctgctgtggcccctcctgcatcttctgtggcc
acacctgctactgctgccgctgcagccactgctgctgcacccactgccacctcaccaccc
cctccacagacagcatttggatttcctggagatggcatgccgcagccagcttatgcacag
cacccaaatatggatcagtttccacctcgaatgatggggatacaacaagatccagtacac
catcaggttcctcttcctcctaatggacaaatgccaggatatggacttcttcctacacct
ccatttcctcccatggctcagcctgtgatccctccaactccaccagtacagcagactttc
caaccttcttttcaggcacaaaatgaaccacttacacagaagccacatcagcaggagatg
gaagtggaacaaccttgtattccagaggttaagcggcatatgtctgacagcagaaagtca
agatctaggtcagcatccaggtcaccaaaaaggagacgatctagatctggttctagatct
cgaaggtctcgtcatcgacgttcccgatctcggtccagggatagacgccgacattctcct
cgatctcggtcccaagaaaggcgggatcgagaaaaagagagggaacggcgacagaaaggc
ctgcctcaaatcaagccagaaactgcaagcgtttgcagtactacactctgggtggggcag
ctggacaaaaggactactcaacaggatgttgccagtcttttggaagagtttggtcccatt
gaatcaattaatatgattcctccccggggctgtgcctatattgttatggttcataggcaa
gatgcctatcgtgccctgcagaaactgagccgtggaaactataaagtaaatcaaaaatcc
ataaagattgcctgggccttaaacaaaggaataaaagcagattataaacagtattgggat
gtagaacttggagttacttatattccgtgggacaaagtcaaacctgaggaattggagagt
ttttgtgaaggaggaatgttggacagtgatacgcttaacccagattggaaaggaattccc
aagaagcctgaaaatgaagtcgctcaaaatggaggtgcagaaacctcacatacagaacca
gtatcacccatacctaaacctttacctgtgcctgtccctcctattcctgttcctgcacct
ataacagtgccacctccacaggtcccaccacatcagccgggccctcctgtagttggtgct
cttcagccgcccactttcacacctcctttgggaattccccctccaggctttggtcctggt
gttcctccaccgccgcctcctccaccatttttgcgcccagggttcaatccaatgcattta
ccaccaggttttcttcctcctggacccccacctcctataactccaccagtatccattcct
cctcctcacactccaccaataagcatcccaaactctactatcgctggtataaatgaagac
actacaaaagacttatctattggaaatcccattccaacagtggtgtctggggctagagga
aatgccgagtctggtgacagtgcgaaaatgtatggctctgctgtgccacctgctgcaccc
acgaatctgcctacccctcctgtaacccagcctgtttcacttcttggcactcaaggagtt
gctcctggtcctgtgatcgggctgcaggcaccgtctactggtcttcttggtgcccgacct
ggcctcatcccgctccagcgccctccaggaatgcctccacctcacctacagagattccct
ctgatgccaccccgccccatgccgccgcacatgatgcacaggggtccgccaccaggacca
gggggctttgcaatgcctcccccacatggaatgaaagggcccttcccaccacatggccct
tttgttagacctggtgggatgccagggttggggggcccagggccaggcccaggggggccc
gaagacagagacggaaggcagcagcaatcccagccacagccacagcagccacctccacca
cagccacagccacagcagccaccaccgtcacagcagccacctccagcccagcagcagcca
cagcagtttagaaatgatagcaggcagcagttcaattcaggtagagaccaagaaaggttt
ggaagaagatctttcggaaatagggtggaaaatgaccgggaacggtatgggaaccgtaat
gatgagagagagaatagtaatcgagacaggagagagtggggaaggaggagccctgaccgg
gacaggcacagagacttggaagagagaaatagacgctctagtgggcatcgagacagagag
agagattctagagatagagagtctcgtagagagaaggaagaaaaccgaggaaaggaaaag
cctgaggtgacagacagggcaggtggtaacaaaaccgctgaacctcctgttagccaagtg
ggaaatgtagatactgtttcagaacttgctaagggggaggccgaggccacagtggtgaaa
ccttccgaagagttacctgctgaggctacctcatccgttgaacccgaaaaggattctggc
tcagcagcagaggctcctcgctag
DBGET
integrated database retrieval system
