Sciurus carolinensis (gray squirrel): 124992516
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Entry
124992516 CDS
T08117
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124992516
Membrane trafficking [BR:
ncar04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124992516
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
124992516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40
ANAPC4_WD40
Beta-prop_TEP1_2nd
EIF3I
Lgl_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
RAB3GAP2_N
Beta-prop_NUP159_NUP214
Synaptobrevin
Beta-prop_EML
Beta-prop_VPS8
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
124992516
NCBI-ProteinID:
XP_047419309
LinkDB
All DBs
Position
9:complement(71888415..72313392)
Genome browser
AA seq
1236 aa
AA seq
DB search
MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSLHPGGTAGILREEIQETLTSEYFQ
ICKTVRHGFPYQPTALAFDPVQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFL
INEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYCHLPFQSKWLYVGTERGNTH
IVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKS
KRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGR
KSESCKPILKVEYKTCRNSEPFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEF
LTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPIFENPYPMDIHESPVTCTAYFAD
CPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIVTGHADGAIKFWDASA
ITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEEDPYAIQMIYWCPESRIFCVSGVSAYVII
YKFSRHEITTEIVSLEVRLQYDIEDIITPEPETSPPFSDLSSQLPSSRSLSGSTNTVASE
GVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQQITSLAINSAYGIVAFGNCN
GLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQIIADNFCMRGLSNFYPDLTK
RIRTSYQSLTELNDSPVPLELERCKSPTSGLATRIPEAAAGFYRNDIPAVRQRNQVHHLP
GEVKGSRKLSLPTDLKADLDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRK
AQSAACMEISLPVTTEENRENSYNRSRSSSISSIDKDSKEAITALYFMESFARKNDSTIS
PCLFVGTSLGMVLIISLNLPSTDEQRFTEPVVVLSSGTFLSLKGAVLTFSCMDRTGGLMQ
PPYEVWRDPNTMDENEKTWKRKLVMNSSSSSQEIGDHQYTIICSEKQAKVFSLPSQTCLY
VHNITETSFILQANIVVMCNSACLACFCANGHIMIMSLPSLRPMLDVNYLPLTDMRIART
FCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQDMLGDLFTPIETPEAQNRGFLKGLFGGS
GQTFDREELFGEATAGKASRSLAQHIPGPGGIEGMKGAAGGVMGELTRARIALDERGQRL
GELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaatttccgaaaagttttggatggtttaactgcctcctcccctggcagt
ggtagcagcagtggcagtaacagtggtggtggggctggaagtggttccctgcatccagga
ggaactgcagggattcttagagaggagattcaggaaaccctgacttcagagtatttccag
atttgcaagactgttcggcatggttttccttatcagcccacagcattggcctttgatccg
gttcagaaaatcttagctattggaacaaggacaggtgctatacgaatacttggtagacct
ggagttgattgttattgccaacatgaaagtggtgcagctgtcttgcagctacaattcttg
atcaatgagggtgctttggtcagtgcaagttcagatgatacacttcatttgtggaacctt
agacaaaaaagacctgctattcttcattctcttaaatttaaccgagaacgaattacttac
tgtcatctacctttccagagtaagtggctctatgttggaacagaaagaggaaatacacat
attgtaaatattgaatctttcattctttctggatatgttatcatgtggaacaaggcaatt
gaactgtccaccaagactcatccaggtcctgttgtacatttaagcgatagcccaagagat
gaaggcaaactgctaataggttatgaaaatggtactgtagtattctgggatttgaaatct
aaaagagcagaactgagagtttattatgatgaggctattcattcaattgattggcatcat
gagggcaaacagttcatgtgcagccattcagatggtagcttgactttatggaacctaaaa
agtccaagtcgccctttccagaccacagttccacatggaaaaagtcaaagagaaggaaga
aaatctgaatcttgcaaaccaattcttaaagtagaatacaagacctgcagaaacagtgaa
ccattcataatattctctggtgggctgtcctatgacaaagcttgcagaagaccaagttta
accatcatgcatggaaaagcaattacagtacttgaaatggatcatcctattgttgaattt
ctaactttatgtgaaacaccctatccaaatgaatttcaagaaccctatgctgtcgtagta
cttctggagaaagatctcattgtagttgatctgacacaaagcaattttcctatctttgaa
aatccatatcccatggacattcatgaatcaccagttacatgcacagcatattttgctgat
tgtcctccagacttgattttagtactgtattctattggagtcaagcataaaaaacaaggc
tacagtaataaggagtggccaatcagtggaggagcttggaaccttggagcacaaacatat
ccagaaattattgttactggtcacgcagatggagcaataaaattttgggatgcttctgca
ataactctgcagatgctgtacaagctaaaaacttcaaaagtctttgaaaaacagaaggta
ggagaaggcaaacaaacatgtgaaattgtagaagaagatccatatgctattcagatgatt
tactggtgtccagaaagcagaatattttgtgtatcaggagtctctgcctacgtcataatt
tataaattcagcagacatgaaattacaacagaaatagtgtcattagaggtacgacttcag
tatgatattgaagatattattactcctgaaccagaaacaagtcctccattttcagatctc
tcatcccagcttccttcttcaaggagtctttcagggagcactaacaccgtggctagtgaa
ggagtcacaaaggacagtatcccatgcctcaatgttaagacacgacccgtgcgaatgccc
ccaggatatcaagcagaacttgttattcagttggtgtgggtagatggtgaacctcctcaa
cagattactagtcttgccataaactcagcatatggaatagttgcctttggaaactgcaat
gggttggctgtggtggattttatacagaagacagtactgttaagcatggggaccattgac
ctttatagatcaagtgacctatatcagcgacaaccacgttctcctcgaaagaacaaacag
atcattgcagacaacttttgcatgcgtggcctgtctaacttttatcctgatttaacgaaa
cggatccgtacttcttaccagagtttaactgagttgaatgatagtccagtaccactggaa
cttgaacgttgcaagtctcccacttcaggacttgctaccagaattcctgaggcagcagca
ggcttttataggaatgacattccagctgtgagacagaggaatcaagtacatcacttgcca
ggtgaagttaaaggatcaagaaagttaagtctgccaacagatcttaaagctgatcttgac
catgtaaatggacactgcacaagtccaacttctcagagttgcagttctggaaaacgtctt
tctagtgctgatgtttcaaaagtaaatcgctggggtcctggaagaccaccttttcgaaag
gctcagtcagctgcttgcatggagatttctttaccagttacaacagaagagaaccgagag
aattcatataatcgttccagaagctctagcatatccagtattgacaaagattctaaagaa
gcaattacagctttatacttcatggaatcctttgcacggaaaaatgactctaccatctct
ccttgtctgtttgttggaaccagtctgggaatggtattaatcatctccctaaacctacca
tcaacagatgaacaaaggtttacagagccggttgtggtattgtcaagtggtacattcctc
tcattgaaaggagctgttctaacattttcctgtatggaccgaactggtggattaatgcaa
ccaccatatgaagtttggagggatccaaacaccatggatgaaaatgaaaaaacttggaaa
aggaaattggtcatgaactcctcctcttcatcccaagaaataggagatcatcagtataca
ataatttgctcagaaaaacaagccaaagtcttttcactgccttctcagacttgcctttat
gttcataacatcaccgaaacatcttttatactgcaagcaaacatcgtggtcatgtgtaac
agtgcctgcttggcatgcttttgtgctaatgggcatatcatgataatgagcctacctagc
cttcgcccaatgttggatgttaattatttgccactgacagacatgaggatagcacggaca
ttttgttttaccaatgaaggacaggcattgtaccttgtctctcctactgaaattcagcgg
ttaacatacagccaggaaatgtgtgataatctacaggacatgcttggagatttgtttact
cccatagagacaccagaagctcagaatagaggctttcttaagggactgtttggtggaagt
ggacaaacatttgacagagaagagctctttggggaagccacagcaggaaaagcgtctcgc
agccttgcacagcacattcccggaccagggggtatagaagggatgaaaggcgctgctggg
ggggtcatgggagagctgacccgtgcccggattgccctcgacgagagaggacagagacta
ggcgagctggaagagaagactgcaggcatgatgaccagcgcagaagcattttccaaacat
gcacatgagttaatgctgaaatataaggataagaaatggtaccaattctga
DBGET
integrated database retrieval system
