KEGG   Sciurus carolinensis (gray squirrel): 124992527
Entry
124992527         CDS       T08117                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03020  RNA polymerase
ncar03420  Nucleotide excision repair
ncar04623  Cytosolic DNA-sensing pathway
ncar05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    124992527
  09124 Replication and repair
   03420 Nucleotide excision repair
    124992527
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    124992527
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    124992527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncar03021]
    124992527
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124992527
Transcription machinery [BR:ncar03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     124992527
  RNA polymerase III system
   RNA polymerase III
     124992527
  RNA polymerase I system
   RNA polymerase I
     124992527
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      124992527
SSDB
Motif
Pfam: RNA_pol_Rpb8 RNA_pol_RpbG
Other DBs
NCBI-GeneID: 124992527
NCBI-ProteinID: XP_047419337
LinkDB
Position
9:54538063..54544244
AA seq 195 aa
MRHCAPVLPLFSPHIFPVSFSTRGCSLTQSWLRGLHFFWSCGPLTMAGILFEDIFDVKDI
DPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEY
NPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGF
EVDSRVYLLMKKLAF
NT seq 588 nt   +upstreamnt  +downstreamnt
atgcgtcattgtgctccggtgttgccgctcttcagcccgcacatttttcctgtctctttc
tccacgcgagggtgttcgctaacccagtcgtggctgcgtggtctgcacttcttctggtct
tgtggccccctcacgatggcgggcatcctgtttgaggatattttcgatgtgaaagacatt
gacccggagggtaaaaagtttgaccgagtatctcgactgcactgtgagagtgaatctttc
aagatggacctcattttagatgtaaacattcagatttaccctgtggacttgggtgacaag
ttccgattggtcatagctagtaccttgtatgaagatggtaccctggatgatggtgaatac
aatcccacagatgacaggccttccagggctgaccagtttgaatatgtaatgtatgggaag
gtgtataggattgagggggatgaaacgtccactgaagcagcaacacgcctttctgcctac
gtgtcctatggtggcctgctcatgagactgcagggtgacgccaacaacctgcatggattt
gaggtggattccagagtttatctgctgatgaagaaactggccttctga

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