Sciurus carolinensis (gray squirrel): 124992699
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Entry
124992699 CDS
T08117
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124992699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124992699
03012 Translation factors [BR:
ncar03012
]
124992699
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124992699
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124992699
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124992699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
ATPase
AAA_14
AAA_23
NPHP3_N
DUF6782
AAA_34
Motif
Other DBs
NCBI-GeneID:
124992699
NCBI-ProteinID:
XP_047419818
LinkDB
All DBs
Position
9:complement(3932622..3972881)
Genome browser
AA seq
1000 aa
AA seq
DB search
MSYDSHQNWGRDGGSRSSGGSYGGGRGGNRGPGGSGGGRGGRGRHPGHLKGREIGLWYAK
KQTQKNKDAERQERAVVHMDERREEQIVQLLNSVQAKNEKDSEAEISWFAPEDHGYGTEV
SDGTKPSSVKKLDSQEKKVKNQEKKTFRIRDKSYIDRDSEYLLQENEPDGTLDQKLLEDL
QKKKTDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNY
IERGKGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQIRLQSRLPRKQGSIL
YCTTGIILQWLQSDPHLSSVSHIVLDEIHERNLQSDVLMTVIKDLLQFRSDLKVILMSAT
LNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPEQKEHRSQFKRGFMQGHIN
RQEKEEKEAVYQERWPDYIRELRRRYSASTVDVIEMMDDDKVDLNLIAALIRYIVLEEED
GAILVFLPGWDNISTLHDLLMSQVMFKSDKFIIIPLHSLMPTVNQTQVFKRTPPGVRKIV
IATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQP
GHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVL
LSIKHLMELNALDKLEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFK
DPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSS
NTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAGLYPKVAKIRL
NLGKKRKMVKVYTKTDGLVALHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPY
CLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVD
WKDTKSRDCAVLSAITDLIKTQEEAAPRSFPPRFQDGYYS
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgactcccatcagaactggggccgcgacgggggatcccgaagctccggcggg
agctacggcgggggccgcggagggaaccgaggccccggcggcagcgggggcgggcggggc
ggccgcggccggcatcccgggcaccttaagggccgcgagattggcctgtggtatgcgaaa
aagcagacgcagaagaacaaggatgccgagaggcaggagagagctgtcgtacacatggat
gaacgacgagaagagcaaattgtgcagctgctaaattctgtccaagctaagaatgaaaaa
gattcagaagcagagatatcctggtttgcacctgaggatcatggatacggtactgaagtt
tctgatgggacaaaaccaagctcagtgaagaaacttgacagccaggaaaagaaagtgaaa
aaccaagaaaaaaagacatttaggatcagagacaaatcatatattgaccgagactctgag
tatctcttacaagaaaatgaaccagatggaaccttagaccaaaagttactggaagattta
caaaagaaaaaaactgatcttcggtatattgaaatgcagcatttcagggaaaagctgcct
tcatatggaatgcaaaaggagttggtaaatttaattgataatcatcaagtaacagtaata
agtggtgaaactggttgtggaaaaaccactcaagttactcagttcattttggataactac
attgaaagaggaaaaggatctgcttgcaggatagtttgtactcagccaagaaggatcagt
gccatttcagttgcagagagagtggctgcagaaagggcagaatcttgcggtaatggaaac
agcactggataccaaattcgtctccagagtcggctgccaaggaaacagggttctatctta
tactgtacaacaggaatcatcctccagtggctccagtcagacccacatctgtcgagtgtt
agtcatattgtacttgatgaaatccatgaacggaatctacagtcagatgttttaatgact
gtgattaaagatcttcttcagtttcgatctgacctaaaagtaatattgatgagtgcaaca
ctgaatgctgagaaattttcagaatattttggtaactgtccaatgatacatatacctggt
tttacttttccggttgtagaatatcttttggaagatattattgaaaaaataagatatgtt
ccagaacagaaagaacacagatcccagtttaagaggggtttcatgcaagggcacataaat
agacaagaaaaagaagaaaaggaagcagtctatcaggagcgctggccagattatatcagg
gaactgcgaagacggtattctgcaagtactgtagatgttatagaaatgatggatgatgat
aaagttgatctgaatttgattgctgcccttattcgatacattgttttggaagaagaggat
ggtgcaatactggtcttcctaccaggctgggacaatatcagcacgttacatgatctcttg
atgtcgcaagtgatgtttaaatcagataagtttattattatacctttacattcactgatg
cctacagtaaaccagacacaggtatttaaaagaactcctccaggtgttcggaaaatagtg
attgctaccaacattgcagagactagcattaccatagatgatgtagtttatgtgatagac
ggggggaaaattaaagagacacactttgatactcagaacaacatcagcacgatgtctgcc
gagtgggttagtaaagctaatgccaaacagaggaaaggccgagctggaagagttcaacct
gggcattgttaccatctgtataatggccttcgagcaagtcttttggatgattatcaacta
ccagagattttgagaacacctttggaagaactttgtttgcagataaagattttaagacta
ggtggaattgcttattttctgagtaggttaatggatccaccatcaaatgaggcagtgctg
ttgtccataaaacacttgatggaactgaatgctctggataaactagaagaactgacacct
cttggagtccacttagcccggttaccagttgagccacatattgggaaaatgattcttttt
ggagctctgttctgctgcttagacccagtcctcactattgctgctagtctcagcttcaaa
gatccctttgtcattccattgggtaaagaaaagattgcagatgcaagaagaaaagaattg
gcaaaagaaactagaagtgatcacctgactgttgtgaatgcatttgagggctgggaagaa
gctaggcggcgtggtttcagatatgagaaggactactgctgggaatattttctgtcctca
aacacactgcagatgctgcataacatgaaaggacagtttgctgaacatcttcttggagct
ggatttgtaagcagtagaaatcctaaagacccggaatctaatataaattcagataatgag
aagataataaaagctgtcatctgtgctggtttatatcccaaagttgctaaaatccgacta
aatttgggtaaaaaaagaaaaatggtgaaagtttacaccaaaactgatggactggttgct
cttcatcctaaatctgttaatgtggagcaaacagattttcactacaactggcttatctat
cacctaaagatgagaacaagtagtatatacttgtatgactgcacagaagtttccccgtac
tgtctcttgttctttggaggtgatatttccatccagaaggataatgaccaggaaaccatt
gctgtagacgaatggatcgtgtttcagtctccagcaagaattgcccatcttgttaaggaa
ttaagaaaggaactagatatccttctacaagagaagattgaaagtcctcatcctgtggac
tggaaggacacaaaatccagagactgtgctgtcctgtcagctattacagacttaatcaaa
acacaagaagaggcagctcccaggagctttccaccacgattccaggatgggtattacagc
tga
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