KEGG   Sciurus carolinensis (gray squirrel): 124992942
Entry
124992942         CDS       T08117                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ncar04121]
    124992942
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124992942
Enzymes [BR:ncar01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124992942
Ubiquitin system [BR:ncar04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124992942
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    124992942
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-RING_2 DEAD RING_XB3-XBAT31 zf-RING_5 ResIII zf-ANAPC11 zf-C3HC4_4 HDA2-3 zf-Nse AAA_34 Prok-RING_4 zf-rbx1
Other DBs
NCBI-GeneID: 124992942
NCBI-ProteinID: XP_047420297
LinkDB
Position
9:8487784..8535253
AA seq 1016 aa
MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDIIPPDDFLTSDEELDSVLF
GTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHLKKDLAAALA
YIMDNKLAQVEGVVPFGANNAFTMPLHMTFWGKEENRKAVLDQLKKHGFKLGPAPKSVGF
SLESSWGSGRAGPSYSVPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAVETLL
LPHQKQALAWMISRENSQELPPFWEQRDDLYYNTITNFSEKDRPENVHGGILADDMGLGK
TLTAIAVILTNFHDGRPLPVERIKKNQLKKECKECNVKDESEKLGGNSSSEKADGQSKER
SRCSEEPSISHIKEKNKCSTSELSSSRPKRRKLTVQYVESSDSEEIEASELPQKMKGKLK
NVQSETKSRAKAGSSKVKEDAAFACALTSPSPTTKKKTLKRGASAVEGSKKTDVEERPRT
TLIICPLSVLSNWIDQFGQHIKSEVHLNFYVYYGPDRIRDPTLLSKQDIVLTTYNILTHD
YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLW
SLLSFLKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLE
LPERKVFIQHITLSDEERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICC
HTHLLTNAVSSGGPSAFSLGNDTPEELRKKLIGKMKLILSSGSDEECAICLDSLTVPVIT
HCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDSEKKSNMEWTSSS
KINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVES
IQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQ
EVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKSNANEMKQAKINEIRTLIDL
NT seq 3051 nt   +upstreamnt  +downstreamnt
atgtcctggatgttcaagagggatcctgtttggaagtatttgcagactgtccagtatgga
gttcatggaaattttccacgcctctcatatccaactttctttccacgttttgaattccaa
gatattattcctccagacgacttcctaactagtgatgaagaactagattcagttttattt
ggaactttgagaggtcatgtagttggactacgctattacacaggagtagttaacaataat
gaaatggttgcattacaacgagaacctaataacccctatgataagaatgccattaaagta
aacaatgtgaatggaaatcaggttgggcatttaaagaaagatctggcagctgctttggcc
tatatcatggacaacaaattggcacaagtggaaggggtagttccttttggtgcaaacaat
gcttttaccatgcctctgcatatgactttttggggaaaagaagaaaatagaaaagcagtt
ttagatcagttgaagaaacatggatttaaattgggccctgcaccaaaatctgtgggattc
agtttggaaagtagttggggctctggaagagctggaccgagctacagtgtgccagttcat
gctgcagtgcagatgacgactgaacagcttaaaacagaatttgacaaattatttgaagat
ttaaaagaagatgataaaactcatgaaatggaaccagctgaggctgttgaaacactgttg
cttcctcatcaaaaacaagctctggcttggatgatatcccgggagaacagtcaagagctc
ccgccattctgggagcagcgagatgacttgtactataacacaataacaaatttttctgag
aaagaccgaccagaaaatgtccatggaggaattttagctgatgacatgggtttgggtaaa
actcttacagccattgcagtaatccttaccaacttccatgatggcagacctcttcctgtt
gagagaattaaaaagaatcaactaaagaaggaatgtaaggaatgtaatgttaaagatgag
tctgagaaacttggaggaaacagttccagtgaaaaagcagatgggcaaagcaaagaaaga
tctagatgtagtgaagaacccagtatttcacatatcaaggagaagaataagtgttccacg
tcagaattgtctagctctcgccccaaaagaagaaaacttactgtccagtatgtggaaagc
agtgattcagaggaaattgaagcaagtgaattgccacagaaaatgaaaggcaaattgaaa
aatgtacagtcagagactaaaagtagggcaaaagcagggtcttccaaggtcaaagaggac
gcagcgtttgcatgcgcactcacttcaccgagccctacaacaaagaagaaaacgctgaaa
agaggagcatctgcggtggagggttcaaagaaaactgatgttgaagagaggccaagaaca
acactgattatctgcccactgtctgtgttaagcaactggattgaccagtttggacaacat
ataaaatcagaagtgcacttgaatttttatgtttattatggtcctgatcgtattagagac
ccaaccttgctttcaaaacaggatattgttttgactacatacaacattttaacccatgac
tatggaactaaaggtgatagtccattacatagcataaggtggttaagagtgatcctggat
gaaggccatgccatacgaaatccaaatgctcagcagacaaaagctgtacttgatttagaa
gcagaaaggagatgggtattgacaggtacacctatccagaattctttaaaggacttgtgg
tctcttctctcctttttaaaacttaaaccatttcttgatagagaatggtggcataggaca
atacagcgtcccgtcacaatgggagatgaaggaggacttaggcgtttacagtccttaatt
aaaaatatcacacttagaagaacaaagacaagcaaaattaaaggaaagcctgttttggag
ttaccagaacgtaaagtatttattcagcacattacactttcagatgaagagagaaagatt
tatcaatcagtgaaaaatgaaggcaaagctactattggaaggtactttaatgaagggact
gtcctcgcacactacgcagacgtcctgggtcttctgcttagactgcggcagatttgttgt
cacactcacctgctcacgaatgcagtgtcttccggcggcccctcagccttttctctagga
aatgatacacctgaagaattgagaaagaagttaatagggaagatgaagttaatcctgagc
tcaggttcagatgaagaatgtgcaatttgcttggattctttgacagttcctgtgataaca
cattgtgcacatgtattttgtaaaccttgcatttgccaggtcattcagaatgagcagcca
catgctaaatgccctttatgcagaaatgatatacatggagacaatttattagaatgtcct
ccagaagaactggcatgtgacagtgagaaaaagtccaatatggaatggacatccagctca
aagattaatgctctaatgcatgctttgattgacttaagaaagaagaatcccaacataaaa
agtttagttgtttctcagtttacaacgttcctgtctttaatagaaacaccacttaaagcc
tccggatttgtgtttactcgtttggatggttccatggcccagaagaaaagagttgaatca
attcagtgtttccaaaacactgaagcgggatctccgactataatgctgctgtccttgaaa
gcagggggtgttggtttgaatctttgtgcagcttctcgggtatttttaatggatccagcc
tggaaccctgctgctgaggaccagtgcttcgacaggtgccacagacttggccagaagcaa
gaagttatcatcactaaattcattgtgaaagattctgttgaagaaaatatgctgaaaata
caaaacacaaaaagagaacttgcagctggagcttttggaactaaaaaatcaaatgctaat
gaaatgaaacaagctaagattaatgaaattcgaactttaattgatttataa

DBGET integrated database retrieval system