Sciurus carolinensis (gray squirrel): 124992972
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Entry
124992972 CDS
T08117
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
ncar04211
Longevity regulating pathway
ncar05010
Alzheimer disease
ncar05014
Amyotrophic lateral sclerosis
ncar05016
Huntington disease
ncar05017
Spinocerebellar ataxia
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124992972
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
124992972
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
124992972
05014 Amyotrophic lateral sclerosis
124992972
05016 Huntington disease
124992972
05017 Spinocerebellar ataxia
124992972
05022 Pathways of neurodegeneration - multiple diseases
124992972
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124992972
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124992972
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124992972
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124992972
Membrane trafficking [BR:
ncar04131
]
Autophagy
Autophagosome formation proteins
ULK complex
124992972
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124992972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Jag_N
Motif
Other DBs
NCBI-GeneID:
124992972
NCBI-ProteinID:
XP_047420375
LinkDB
All DBs
Position
1:81156663..81229612
Genome browser
AA seq
1593 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCDRAPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLNENEGSEKAEMKRSTEL
VLSPDMPRTTNTSLLTSFHKSVEHVAPDTTDDESGKEIRESCQSTVQQDETSVDTKDGDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIRPFIVECHQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKASVSQASPQSASSPRIESATG
IATTTSSRTPPPLTVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQVSLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQGTN
TCGKEVFGDHASLNVQLEKCRVVAQDSHCSIQTIKEDLCHFRTFVQKEQCDFSNSLKCTA
LEIRNIIEKVKCSLEITLKEKHQKELQSLKSEYEGKLDALIKESEENENKIKKLKGDLLC
LEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHTQNCEIRELKQSREVVLED
LKKLHVENDEKIQLLREELQCLEQSHLKELEDTLHVRHTQEFEKVITDHQVSLEKLKEEN
QQRIVQIQESHAMIIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKIMLEES
RTQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELI
SRHEEESNILKAELAKVTSLHHQAFEIEKNLKEQIVELQSKLDSELSALEKQKDEKITQQ
EEKYEAIIQNLEKDKERLVMSHEQDREQLIQKLNCEKEEAIQAALKEFKLEREVVEKELL
EKVKQLENQIAQSPAVDSTREDSSSLVAELQEKLQVEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKLRKENIINDLSDKLKTTMQQQERDKDLIESLSEDRARLLEE
KKKLEEEVSKLRSSSFVPSAYVTTAPELYGACAPELPGETERSAMETTDEGRVDSAMETS
MMSVQENIPMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtgtttctagttaatactggaactactctaacatttgacactgaactt
acagtacaaactgtggcagaccttaaacatgccattcaaagcaaatacaagattgctatt
cagcatcaggtacttgtggtcaatggaggagaatgcatggctgcagatagaagagtgtgt
acctacagtgctgggacggacacaaatccaatttttctttttaacaaagaaatgatctta
tgtgaccgtgcacctgctattcctaaaacgaccttttcaacagaaaatgacatggaaata
aaagttgaagagtctcttatgatgcctgcagtttttcatactgttgcttcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgttctttttgcgaaggtcttgtc
catgatgaacatcttcaacaccaaggctgggctgcaatcatggccaatctggaggactgt
tcaaattcataccaaaagctacttttcaagtttgaaagtatttattcaaattatctgcaa
tccatagaagacatcaagttaaaacttactcatttaggaactgctgtttcagtaatggcc
aagattccactgttggagtgcctaaccagacatagttacagggaatgtttgggaagactg
gattctttaaatgaaaatgaaggctcagaaaaggctgagatgaaacgatccactgaactg
gtgctttctcctgatatgcctagaacaactaacacatccttgttaacctcatttcacaag
tcagtggaacatgtagccccagatactacagatgatgaaagtggcaaagaaattagggaa
tcttgtcaaagtactgtccagcaagatgaaacttcagtagatactaaagacggtgatctg
cctttttttaatgtttctttgttagactggataaatgttcaagatagacctaacgatgtg
gaatctttggtcaggaagtgctttgattctatgagcaggcttgacccaaagattattcgc
ccatttatagttgaatgccatcaaacaattgccaaacttgataatcagaatatgaaagcc
attaaagggcttgaagatcggctctatgccctggatcagatgattgctagctgtggccga
ctggtgaatgaacagaaagagctcgctcagggatttttagctaatcagatgagagctgaa
aacttgaaggatgcatctgtattacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaatcatagaaaattgttggatattaaacagaagtgtaccactgccaaa
caagagctagcaaataatctacatgtcagactaaaatggtgttgctttgtgatgctacat
gctgatcaagatggagagaaattgcaagctttgctccgccttgtaatagagctgttggaa
agggtcaaaattgttgaagctcttagtacagttcctcagatgtactgcttagctgttgtt
gaagttgtaaggagaaaaatgttcattaaacactacagggagtgggctggtgctttagtc
aaagatggaaagagattgtatgaagctgaaaagtctaaaagggaatcctttgggaaatta
tttaggaagtcttttttaagaaaccgtctgtttcggggactggactcctggcccccttcc
ttttgtactcagaagccccgaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttcttcaatcattttgtccctcagaagttcagccattcctcagggtcccttta
ctttgtgactttgaacctctacaccagcatgtacttgccctacataatttggtaaaggca
gcacaaagtttggatgaaatgtcacagaccattacagatctactgaatgaacaaaaggca
tctgtgagtcaggcatccccacagtctgcttcttccccacggatagaaagtgcaacagga
attgcaactactacctcatcaagaactcctcctccactaactgttcaggaccccttatgt
cctgcagtatgtcccttggaagaattatctccagatagcattgatgcacatacatttgat
tttgaaactatcccccatccaaacatagaacaaactattcaccaagtttctttagatttg
gattcattagcagaaagtccggaatcagattttatgtctgctgtgaatgagtttgtgata
gaagaaaatttatcttctcctaatcctataagtgatccacaaagtccagagatgatggtg
gaatcactttattcatcagttatcaatgcaatagatagtagacgtatgcagggtacaaat
acatgtggtaaggaggtttttggagatcatgcttctctgaatgttcaactggaaaaatgt
agagttgttgcccaagactctcactgcagtatacaaactatcaaggaagacctttgccat
ttcagaacatttgtacaaaaagaacagtgtgacttttcaaattctttaaaatgtacagca
ttggaaataagaaacattattgaaaaggtaaaatgttccctggaaataacactaaaagaa
aaacatcaaaaagaactacagtctttaaaaagtgaatatgaaggtaagcttgatgcacta
ataaaggaaagtgaagaaaatgaaaacaaaatcaaaaaactgaaaggagacctcttatgc
cttgaggaagttttacaaaataaagacaatgaatttgctttggttaaacatgaaaaagaa
gctgtcatctgcctacagaatgaaaaggatcagaagttgttggagatggaaaatataatg
cacactcaaaattgtgaaatcagagagctgaagcaatcacgagaggtggtgttagaagac
ttaaaaaagctccatgttgaaaatgatgagaagatacagttattgagggaagaacttcag
tgcttagagcaaagtcatctgaaagaattagaagacacactgcatgtcaggcatacacag
gagtttgagaaagttataacagaccaccaggtttctttggagaaattgaaagaagaaaat
caacaaagaattgttcagatacaagagtctcatgccatgattatccaggaaaaagaacag
caactgcaggaattaaaactcaaggtttctgatttgtcagacatgagatgcaagttagag
gttgaacttgctttgaaggaagcagaaactgatgagataaaaattatgctggaagaaagc
agaacacagcagaaggagaccttgaaatctctccttgaacaagaaacagaaaatttgaga
acagaaataagtaaactaaaccaaaagatccaagataataatgaaaattatcaggtaggc
ttagctgagctaagaactttaatgacaattgaaaaagatcagtgcatttcagagttaatt
agtagacacgaagaagaatctaatattcttaaagctgaattagctaaagtaacatctttg
catcatcaagcattcgaaatagaaaaaaacttaaaagaacaaatagttgaactacagagt
aaattggactcagaattgagtgctcttgaaaaacaaaaagatgaaaaaatcacccaacaa
gaagagaaatatgaagctattatccagaaccttgagaaagacaaagagagattggtcatg
agccatgaacaagacagagagcagttaattcagaagcttaattgtgagaaagaagaagct
attcaggctgccctaaaagaatttaaattggagagagaagttgttgagaaagagttatta
gagaaagttaaacaacttgagaatcaaatagcacaaagtcctgctgttgattctaccaga
gaagattcttcaagcttagttgctgaacttcaagaaaagcttcaggttgaaaaagctaag
tttctagaacaacttgaagagcaagaaaaaagaaaaaatgaggaaatgcaaaatgttcga
acatctttgattgctgaacaacaaaccaactttaatactgttttaacaagagaaaaattg
agaaaagaaaacataataaatgatcttagtgataagttaaaaactacaatgcagcaacaa
gagcgcgataaagatttgatagagtcactttcggaagatcgtgctcgtttgcttgaggaa
aagaaaaaacttgaagaagaagtcagtaagttgcgtagtagcagttttgttccttcagca
tatgtaacaacagctccagaactttacggagcttgtgcccctgaactcccaggtgaaaca
gaaaggtcagccatggaaacaacagatgaaggaagagtggattcagcaatggagacaagc
atgatgtctgtccaagaaaatatccctatgctgtctgaagaaaaacagaggataatgctc
ttagaacgaacactgcaattgaaggaagaagaaaataagcggttaaatcaaagattgatg
tcacagagcatgtcttcagtatcttcaaggcactctgaaaagatagccattagagatttt
caggtgggagatttggtactcatcatcctagatgaacgtcatgacaattatgtattattt
actgttagtcctactttatattttctgcattcagagtctttgcctgccctggatctcaaa
ccaggtgagggtgcttcaggtgcatctagaagaccctgggtacttggaaaagtaatggaa
aaggaatactgtcaagccaaaaaggcacaaaacagatttaaagttcctttggggacaaag
ttttacagagtgaaagcagtgtcatggaataagaaagtatag
DBGET
integrated database retrieval system
