Sciurus carolinensis (gray squirrel): 124993076
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Entry
124993076 CDS
T08117
Name
(RefSeq) intraflagellar transport protein 57 homolog
KO
K04638
intraflagellar transport protein 57
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05016
Huntington disease
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
124993076
05022 Pathways of neurodegeneration - multiple diseases
124993076
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124993076
Cilium and associated proteins [BR:
ncar03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B2
124993076
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IFT57
MCPsignal
Mod_r
DUF745
SpecificRecomb
Motif
Other DBs
NCBI-GeneID:
124993076
NCBI-ProteinID:
XP_047420592
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All DBs
Position
9:84428123..84491382
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AA seq
429 aa
AA seq
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MAAAAAVVTPSGLEDGVSRSRGEGAGEGTVERGPGAAYHMFVVMEDLVEKLKLLRYEEEL
LRKSNLKPPSRHYFALPTNPGEQFYMFSTLAAWLINKAGHPFEQPQEYDDPNATISNILS
ELRSFGRTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPSYPMEELEEETVPE
DDAELTLNKVDEEFVEEETDNEENFIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWG
LEVERVLPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALKETKGFLDKLHNEISRTLEKI
GSREKYINNQLEHLVQEYRAAQAQLSEARERYQQGNGGVTERTRLLSEVTEELEKVKQEM
EEKGSSMTDGAPLVKIKQSLTKLKQETVQMDIRIGVVEHTLLQSKLKEKSNMTRDMHATV
IPEAAIGSY
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgctgcagctgtggtcacgccgtcgggtttggaagatggggtgtctaggtct
cgcggcgaaggggccggggaggggacggtagagcgcgggcccggagcggcctaccacatg
ttcgtggtgatggaagacttggtggagaagctgaagctgcttcgttacgaggaggaactc
ctccggaagagcaacctaaagcccccgtccagacactattttgctctgcctaccaaccct
ggtgaacagttctacatgttttctactcttgctgcttggctgattaacaaagcaggacat
ccctttgagcaacctcaggaatatgatgaccctaatgcaacaatatctaacatattatct
gagcttcggtcctttgggagaactgcagattttcccccttcaaaattaaagtcaggttat
ggagaacatgtatgttatgttcttgattgtttagctgaagaggcattaaaatatattggt
ttcacctggaaaaggccatcataccctatggaagaattagaagaagaaactgttccagaa
gatgatgcagaattaacattgaataaagtggatgaagaattcgtggaagaggagacagat
aatgaagaaaactttattgatctcaatgttttaaaggcccagacctatcgcttggacatg
aacgagtctgccaaacaagaagatattttggaatctacaacagatgctgcagaatggggt
ctagaagttgaacgtgtactaccacaactgaaagtcacgattaggactgacaataaggat
tggagaatccatgttgaccaaatgcaccagcacaaaagtggaattgaatctgctttaaag
gagaccaagggatttttggataaactccataatgaaattagtaggacactggaaaaaatt
ggcagccgagaaaagtacatcaacaatcaactggagcacttggttcaagaatatcgtgca
gctcaagcccagctgagtgaggcaagggagcgataccagcagggaaatggtggagtaact
gaaaggaccaggctcctgtctgaggttacagaagaattagaaaaggtaaaacaagagatg
gaggaaaagggcagcagcatgacagatggtgctcctttggtgaagattaaacagagctta
acaaaactgaagcaagaaactgttcagatggacattaggattggtgttgtggaacacaca
ttactccaatcaaaactgaaggagaagtccaacatgaccagggacatgcatgcaacagtt
attccagaagcagcaataggctcttattaa
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