Sciurus carolinensis (gray squirrel): 124993088
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Entry
124993088 CDS
T08117
Name
(RefSeq) amyloid-beta precursor protein isoform X1
KO
K04520
amyloid beta A4 protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04517
IgSF CAM signaling
ncar04726
Serotonergic synapse
ncar05010
Alzheimer disease
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
124993088
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
124993088
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
124993088
05022 Pathways of neurodegeneration - multiple diseases
124993088
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124993088
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncar00535
]
124993088
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124993088
Peptidases and inhibitors [BR:
ncar01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
124993088
Proteoglycans [BR:
ncar00535
]
Cell surface proteoglycans
Others
124993088
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Others
124993088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APP_E2
APP_N
APP_Cu_bd
APP_amyloid
Beta-APP
Kunitz_BPTI
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
124993088
NCBI-ProteinID:
XP_047420615
LinkDB
All DBs
Position
9:complement(123722401..123964252)
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AA seq
770 aa
AA seq
DB search
MLPSLALLLLAAWTAGALEVPTDGNAGLLAEPQIAMFCGKLNMHMNVQNGKWESDPSGTK
TCIGTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHAHIVIPYRCLVG
EFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFR
GVEFVCCPLAEESDSIDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVTDVEEE
EADDDEDVEDGDEGEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPC
RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDSEEYCLAVCGSVMSQSLFKTTREPLPQD
PVKIPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQA
KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITAL
QAVPPRPRHVFTMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYER
MNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTET
KTTVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLTTRPGSGLTN
IKTEEISEVKMDAEFRHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITL
VMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccagcttggcactgcttctgctggccgcttggacggctggggcgctggaggtg
cccactgatggcaatgctggcctcctggcagaacctcagatcgccatgttctgtggcaag
ctgaacatgcacatgaacgtgcagaatgggaaatgggagtcagatccatcggggaccaaa
acttgcattggtaccaaagagggcatcctgcagtactgccaagaagtctaccctgagctg
cagatcaccaatgtggtggaagccaaccaaccagtgaccatccagaactggtgcaagcgg
ggtcgcaagcagtgcaagacccacgcccacatcgtgatcccttaccgctgcttagttggc
gagtttgtaagtgatgctcttctagttcctgacaagtgcaaattcttacaccaggagcgg
atggatgtttgtgaaacccaccttcactggcacaccgtcgccaaagagacctgcagcgag
aagagcaccaacttgcatgactatggcatgttgctgccctgtggaattgacaagttccga
ggggtagagttcgtgtgctgcccactggccgaggagagtgacagtatcgattctgcagat
gcagaggaggatgactccgatgtgtggtggggtggagcagacacagactatgcagatggg
agtgaagacaaagtagtggaagtggcagaggaggaggaagtgactgatgttgaggaagaa
gaagccgatgatgacgaagacgtggaggatggtgacgagggagaggaggaggccgaggaa
ccctatgaagaggcaacagagaggaccaccagcattgccaccactaccaccaccaccacg
gagtctgtggaagaggtggtccgagaggtgtgctctgaacaagccgagaccgggccctgc
cgagcaatgatctcccgctggtactttgatgttactgaagggaagtgcgcccccttcttt
tacggcggatgtggcggcaacaggaacaactttgactctgaagagtactgcctggcggtg
tgtggcagcgtcatgtcccaaagtttattcaagactactcgggaacctcttccccaagat
cctgttaaaattcctacaacagcagccagcacccccgacgccgttgacaagtatcttgag
actcctggcgatgaaaatgagcacgcccacttccagaaagccaaggagaggctggaggcc
aagcaccgagagaggatgtcccaggtcatgagagaatgggaagaagcggaacgtcaagca
aagaacttgcccaaagctgataagaaggcagtgatccagcatttccaggagaaagtagaa
tctctggaacaggaagcagccaacgagaggcagcagctagtggagacgcacatggccaga
gtggaagccatgctcaatgaccgccgccgactggccctggagaactacatcactgcactg
caggctgttcctcctcggcctcgtcatgtgttcaccatgctgaagaagtatgtccgtgca
gagcagaaagacaggcagcataccctaaagcattttgagcatgtgcgcatggtggatccc
aagaaagctgctcagatccggtcccaggttatgacacacctccgtgtgatctatgagcgc
atgaatcagtctctgtccctgctttacaacgtacctgcagtggctgaggagattcaggat
gaagttgatgagctgcttcagaaagagcagaactactcggatgacgtcttggccaacatg
atcagcgaaccaagaatcagttatggaaacgatgctctcatgccgtctttgactgaaacg
aaaaccaccgtggagcttcttcctgtgaatggagagttcagcctggatgatctccagcca
tggcatccttttggggtggactccgtgccagccaataccgaaaatgaagttgagcccgtt
gacgcccgccctgctgccgaccgaggactgaccactcgaccaggttccgggctgacaaat
atcaagacagaagagatctctgaagtgaagatggatgcggagttccgacatgactcagga
tttgaagttcgtcaccaaaaattggtgttctttgcagaagatgtgggttcaaacaaaggt
gcaatcattggactcatggtgggcggtgttgtcatagcgacagtgatcgtcatcaccttg
gtgatgctgaagaagaagcagtacacatccatccatcatggagtggtggaggttgatgct
gccgtgaccccagaggagcgccacctctccaagatgcaacagaatggctatgagaatcca
acttataagttctttgagcagatgcagaactag
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