Sciurus carolinensis (gray squirrel): 124993134
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Entry
124993134 CDS
T08117
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04390
Hippo signaling pathway
ncar04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
124993134
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
124993134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124993134
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124993134
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Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
124993134
NCBI-ProteinID:
XP_047420710
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Position
9:52188915..52191254
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AA seq
320 aa
AA seq
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MYNMMETELKPPGPQQTSGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRR
KMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK
TLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQ
LGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMAL
GSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQH
YQSGPVPGTAINGTLPLSHM
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcaactccaccgcggcggcggcgggcggcaaccagaagaacagc
ccggaccgcgttaagcggcccatgaacgccttcatggtgtggtcccgcgggcagcggcgc
aagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgcc
gagtggaaacttttgtcggagacggagaagcggccgttcatcgacgaggccaagcgactg
cgagcgctgcacatgaaggagcacccggattataaataccggccccggcggaaaaccaag
acgctcatgaagaaggataagtacacgctgcccggcgggctgttggcccctggcggcaac
agcatggcgagcggggttggggtgggcgccggcctgggcgcgggcgtgaatcagcgcatg
gacagttacgctcacatgaacggctggagcaacggcagctacagcatgatgcaggaccag
ctgggctatccgcagcacccgggcctcaacgcgcacggcgccgcgcagatgcagcccatg
caccgctacgacgtgagcgctctgcagtacaactccatgaccagctcgcagacctacatg
aacggctcgcccacctacagtatgtcctactcgcagcagggcacccctggcatggcgctt
ggctccatgggctcggtggtcaagtccgaggccagctctagccccccggtggttacctct
tcctcccactccagggcgccctgccaggccggggaccttcgggacatgatcagcatgtac
ctccccggcgccgaggtgccggagcccgccgctcccagcagacttcacatgtcccagcac
taccagagcggcccggtgcccggcacagccattaacggcacactgcccctctcgcacatg
tga
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